Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DDJ96_RS13820 Genome accession   NZ_CP029066
Coordinates   2898450..2899820 (-) Length   456 a.a.
NCBI ID   WP_010734059.1    Uniprot ID   A0A1V2UGF5
Organism   Enterococcus mundtii strain Pe103     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2893450..2904820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDJ96_RS13805 (DDJ96_13920) epsC 2894628..2895176 (-) 549 WP_010734062.1 serine O-acetyltransferase EpsC -
  DDJ96_RS13810 (DDJ96_13925) gltX 2895489..2896949 (-) 1461 WP_010734061.1 glutamate--tRNA ligase -
  DDJ96_RS13815 (DDJ96_13930) - 2897275..2898423 (-) 1149 WP_010734060.1 PIN/TRAM domain-containing protein -
  DDJ96_RS13820 (DDJ96_13935) radA 2898450..2899820 (-) 1371 WP_010734059.1 DNA repair protein RadA Machinery gene
  DDJ96_RS13825 (DDJ96_13940) - 2899886..2900413 (-) 528 WP_010734058.1 dUTP diphosphatase -
  DDJ96_RS13830 (DDJ96_13945) proB 2900628..2901431 (+) 804 WP_010734057.1 glutamate 5-kinase -
  DDJ96_RS13835 (DDJ96_13950) - 2901431..2902678 (+) 1248 WP_010734056.1 glutamate-5-semialdehyde dehydrogenase -
  DDJ96_RS13840 (DDJ96_13955) - 2902859..2903167 (-) 309 WP_175401350.1 hypothetical protein -
  DDJ96_RS13845 (DDJ96_13960) - 2903252..2903692 (-) 441 WP_019723030.1 DUF2798 domain-containing protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49928.57 Da        Isoelectric Point: 7.0288

>NTDB_id=289843 DDJ96_RS13820 WP_010734059.1 2898450..2899820(-) (radA) [Enterococcus mundtii strain Pe103]
MAKKAKVQFVCQNCGYVSPKFLGRCPNCGKWNTMVEEIEQDTTDRRVRTSLTGEKAKPTKIAEVVPKKEPRVKTKLEELN
RVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSQQLAAIGGKVLYVSGEESADQIKLRAERLGSIDTEFYLYAETDMNEISR
AIEQISPDYVIIDSIQTMTQPDITSVAGSVSQVRETTAELLKIAKTNGIAIFIVGHVTKEGSIAGPRMLEHMVDTVLYFE
GEQHHSFRILRAVKNRFGSTNEIGIFEMHTHGLEEVANPSQIFLEERLDGATGSAIVVAMEGTRPILVEIQALVTPTMFG
NAKRTTTGLDFNRVSLIMAVLEKRAGLLLQNQDAYLKAAGGVKLNEPAIDLAIAVSIASSYKEKGTQPTECFIGEIGLTG
EIRRVNQIEQRVKEVQKLGFTKVYLPKNNLGGWNIPEGIEVVGVATLDETLRRVFR

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=289843 DDJ96_RS13820 WP_010734059.1 2898450..2899820(-) (radA) [Enterococcus mundtii strain Pe103]
ATGGCCAAAAAAGCAAAAGTTCAATTTGTTTGTCAAAATTGTGGCTATGTGTCGCCTAAATTTTTAGGACGTTGCCCAAA
TTGTGGTAAATGGAATACCATGGTTGAAGAAATCGAACAAGATACAACGGACCGCAGAGTACGAACGAGTTTGACCGGAG
AAAAAGCCAAGCCAACAAAAATTGCTGAGGTGGTTCCTAAGAAAGAACCACGAGTAAAGACGAAGCTAGAAGAATTGAAC
CGTGTTTTAGGCGGTGGTGTGGTCCCTGGCTCGATGGTTTTGATCGGTGGCGACCCTGGTATCGGAAAATCCACCTTACT
CTTGCAAGTATCACAGCAACTGGCTGCTATTGGTGGAAAAGTCCTTTACGTATCGGGAGAAGAGAGTGCGGACCAAATCA
AGTTGCGTGCAGAACGATTAGGTTCGATCGACACAGAGTTTTACTTGTATGCAGAGACAGATATGAATGAAATCAGTCGA
GCCATCGAACAAATTTCACCTGATTATGTCATCATCGATTCGATCCAAACAATGACTCAACCTGATATTACGAGTGTCGC
TGGTAGTGTTAGTCAAGTGCGAGAAACCACAGCTGAGCTATTGAAAATCGCAAAAACAAACGGTATTGCTATCTTTATAG
TAGGTCATGTCACGAAAGAAGGCTCGATTGCAGGTCCGCGCATGTTAGAGCACATGGTTGATACGGTCTTGTATTTTGAA
GGTGAGCAACATCATAGTTTTCGCATTTTGCGTGCCGTCAAAAATCGTTTTGGTTCCACCAATGAGATCGGTATTTTTGA
GATGCACACCCATGGCCTTGAAGAAGTAGCCAATCCTTCACAGATTTTCTTAGAAGAACGATTGGATGGGGCGACAGGTT
CAGCGATCGTTGTCGCCATGGAAGGTACACGTCCGATCTTGGTTGAGATCCAAGCCTTAGTCACGCCTACGATGTTCGGA
AATGCCAAACGAACAACGACTGGTTTAGACTTTAATCGGGTGTCATTGATCATGGCAGTCTTAGAAAAACGGGCAGGATT
ATTGTTGCAAAATCAAGATGCTTACTTAAAAGCAGCTGGTGGGGTAAAATTAAATGAACCTGCAATCGACTTAGCGATTG
CAGTCAGTATTGCGTCTAGTTACAAAGAAAAAGGAACGCAACCAACGGAGTGTTTTATTGGAGAAATCGGTCTGACTGGT
GAAATCAGAAGAGTCAACCAAATTGAACAACGAGTCAAAGAAGTACAAAAATTAGGTTTTACAAAAGTATATTTACCTAA
AAATAATTTAGGTGGTTGGAATATTCCAGAGGGTATCGAAGTCGTAGGTGTTGCTACACTTGATGAAACTCTTAGACGAG
TATTTCGCTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)

AAA domain (AAA_25)

(69-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V2UGF5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

74.945

99.781

0.748
  radA Streptococcus pneumoniae D39

74.945

99.781

0.748
  radA Streptococcus pneumoniae R6

74.945

99.781

0.748
  radA Streptococcus pneumoniae TIGR4

74.945

99.781

0.748
  radA Streptococcus mitis NCTC 12261

74.945

99.781

0.748
  radA Streptococcus mitis SK321

74.945

99.781

0.748
  radA Bacillus subtilis subsp. subtilis str. 168

67.184

98.904

0.664

Multiple sequence alignment