Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   EJC75_RS09210 Genome accession   NZ_CP034404
Coordinates   1481562..1482989 (+) Length   475 a.a.
NCBI ID   WP_000980585.1    Uniprot ID   -
Organism   Escherichia coli strain CRE10     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1476562..1487989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJC75_RS09170 (EJC75_09170) - 1476737..1476886 (+) 150 Protein_1426 DUF5983 family protein -
  EJC75_RS09175 (EJC75_09175) - 1476986..1477066 (+) 81 Protein_1427 hypothetical protein -
  EJC75_RS09180 (EJC75_09180) - 1477355..1477483 (-) 129 Protein_1428 transposase domain-containing protein -
  EJC75_RS09185 (EJC75_09185) - 1477555..1477737 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  EJC75_RS09190 (EJC75_09190) tmaR 1477838..1478167 (-) 330 WP_000450409.1 DUF496 family protein -
  EJC75_RS09195 (EJC75_09195) yeeA 1478339..1479397 (-) 1059 WP_001200910.1 FUSC family protein -
  EJC75_RS09200 (EJC75_09200) sbmC 1479595..1480068 (-) 474 WP_001105389.1 DNA gyrase inhibitor SbmC -
  EJC75_RS09205 (EJC75_09205) dacD 1480187..1481353 (-) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  EJC75_RS09210 (EJC75_09210) sbcB 1481562..1482989 (+) 1428 WP_000980585.1 exodeoxyribonuclease I Machinery gene
  EJC75_RS09215 (EJC75_09215) tsuB 1483032..1483259 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  EJC75_RS09220 (EJC75_09220) tsuA 1483273..1484331 (-) 1059 WP_000492346.1 thiosulfate utilization transporter TsuA/YeeE -
  EJC75_RS09225 (EJC75_09225) plaP 1484510..1485868 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  EJC75_RS09230 (EJC75_09230) yoeI 1485858..1485920 (-) 63 WP_010723108.1 membrane protein YoeI -
  EJC75_RS09235 (EJC75_09235) yeeY 1486135..1487064 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  EJC75_RS09240 (EJC75_09240) yeeZ 1487110..1487934 (-) 825 WP_000754758.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54486.79 Da        Isoelectric Point: 5.4700

>NTDB_id=289465 EJC75_RS09210 WP_000980585.1 1481562..1482989(+) (sbcB) [Escherichia coli strain CRE10]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAIPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=289465 EJC75_RS09210 WP_000980585.1 1481562..1482989(+) (sbcB) [Escherichia coli strain CRE10]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCATTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment