Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   EJH97_RS09565 Genome accession   NZ_CP034389
Coordinates   1979626..1981053 (-) Length   475 a.a.
NCBI ID   WP_021523141.1    Uniprot ID   -
Organism   Escherichia coli strain RS571     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1974626..1986053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJH97_RS09535 (EJH97_09535) yeeZ 1974681..1975505 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  EJH97_RS09540 (EJH97_09540) yeeY 1975551..1976480 (+) 930 WP_023154044.1 LysR substrate-binding domain-containing protein -
  EJH97_RS09545 (EJH97_09545) yoeI 1976695..1976757 (+) 63 WP_010723108.1 membrane protein YoeI -
  EJH97_RS09550 (EJH97_09550) plaP 1976747..1978105 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  EJH97_RS09555 (EJH97_09555) tsuA 1978284..1979342 (+) 1059 WP_000492324.1 thiosulfate utilization transporter TsuA/YeeE -
  EJH97_RS09560 (EJH97_09560) tsuB 1979356..1979583 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  EJH97_RS09565 (EJH97_09565) sbcB 1979626..1981053 (-) 1428 WP_021523141.1 exodeoxyribonuclease I Machinery gene
  EJH97_RS09570 (EJH97_09570) dacD 1981262..1982428 (+) 1167 WP_105955772.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  EJH97_RS09575 (EJH97_09575) sbmC 1982547..1983020 (+) 474 WP_001105416.1 DNA gyrase inhibitor SbmC -
  EJH97_RS09580 (EJH97_09580) yeeA 1983218..1984276 (+) 1059 WP_001200890.1 FUSC family protein -
  EJH97_RS09585 (EJH97_09585) tmaR 1984448..1984777 (+) 330 WP_000450409.1 DUF496 family protein -
  EJH97_RS27180 (EJH97_09590) - 1984878..1985060 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  EJH97_RS26895 - 1985180..1985260 (+) 81 WP_023441679.1 hypothetical protein -
  EJH97_RS09600 (EJH97_09600) - 1985549..1985629 (-) 81 Protein_1869 hypothetical protein -
  EJH97_RS09605 (EJH97_09605) yeeW 1985675..1985869 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54513.81 Da        Isoelectric Point: 5.4700

>NTDB_id=289353 EJH97_RS09565 WP_021523141.1 1979626..1981053(-) (sbcB) [Escherichia coli strain RS571]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNVVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=289353 EJH97_RS09565 WP_021523141.1 1979626..1981053(-) (sbcB) [Escherichia coli strain RS571]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTAATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGTCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment