Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   D8X56_RS05985 Genome accession   NZ_CP034314
Coordinates   1239342..1240391 (+) Length   349 a.a.
NCBI ID   WP_125303002.1    Uniprot ID   -
Organism   Helicobacter pylori strain HP42K     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1234342..1245391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D8X56_RS05965 (D8X56_05965) - 1234420..1235148 (+) 729 WP_125302991.1 carbonic anhydrase -
  D8X56_RS05970 (D8X56_05970) - 1235371..1236492 (-) 1122 WP_125302994.1 DUF874 family protein -
  D8X56_RS05975 (D8X56_05975) asd 1236925..1237965 (-) 1041 WP_125302997.1 aspartate-semialdehyde dehydrogenase -
  D8X56_RS05980 (D8X56_05980) hisS 1237952..1239280 (-) 1329 WP_125302999.1 histidine--tRNA ligase -
  D8X56_RS05985 (D8X56_05985) waaF 1239342..1240391 (+) 1050 WP_125303002.1 lipopolysaccharide heptosyltransferase II Regulator
  D8X56_RS05990 (D8X56_05990) - 1240584..1240856 (-) 273 WP_000744165.1 hypothetical protein -
  D8X56_RS06000 (D8X56_06000) - 1241074..1242078 (+) 1005 WP_125303005.1 aldo/keto reductase -
  D8X56_RS06005 (D8X56_06005) fusA 1242880..1244958 (-) 2079 WP_125303008.1 elongation factor G -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39504.29 Da        Isoelectric Point: 9.6233

>NTDB_id=288772 D8X56_RS05985 WP_125303002.1 1239342..1240391(+) (waaF) [Helicobacter pylori strain HP42K]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAYFILVGPQITCELFKKDEKIEAVFIDDTKKSFFRLLATYKL
AQKIGRCDIAIALNNHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAIAPAPKEYHQVEKYCFLFSQFLKKELDQKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAVLLEKGHEIYFFGAKEDAVVSEEILKLIKGLLKNPLLSH
NAYNLCGKTSIEELIQRIAILDLFITNDSGPMHVAASVQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCAPCKKRVCP
LKNEKNHLCMKSITPLEVLQAAHTLLEES

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=288772 D8X56_RS05985 WP_125303002.1 1239342..1240391(+) (waaF) [Helicobacter pylori strain HP42K]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTACCTAATTGGCTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGTATTTTATCTTAGTGGGCCCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTCATAGACGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTTACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCGCATTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTATTCGCATCGGTTTTGCTCAATTTTTCCGTTCTTTGTTTCTCAGCCATGCGATTGCTCCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAATTGGATCAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGTTTTGTTGGAAAAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTGTCGTTTCTGAAGAGATTTTAAAACTCATCAAAGGCTTGTTAAAAAACCCCTTATTATCCCAC
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATACAACGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGCCCTATGCATGTGGCTGCTAGCGTGCAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAACGATTGTGTTAAACCACCATTTAAGCTGTGCACCTTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCCTTCAAGCCGCTCACACTCTTTTAGA
AGAGTCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

38.192

98.281

0.375