Detailed information    

insolico Bioinformatically predicted

Overview


Name   CJE0566   Type   Regulator
Locus tag   CJ12660_RS04690 Genome accession   NZ_CP028910
Coordinates   884401..885054 (-) Length   217 a.a.
NCBI ID   WP_052787805.1    Uniprot ID   A0A5Z1E8P6
Organism   Campylobacter jejuni strain NCTC 12660     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 879401..890054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJ12660_RS04650 (CJ12660_0894) - 880242..880469 (-) 228 WP_002873578.1 helix-turn-helix domain-containing protein -
  CJ12660_RS04655 (CJ12660_0895) - 880460..880717 (-) 258 WP_032595717.1 hypothetical protein -
  CJ12660_RS04660 (CJ12660_0896) - 880708..880977 (-) 270 WP_002783984.1 hypothetical protein -
  CJ12660_RS04665 (CJ12660_0897) - 881537..881809 (-) 273 WP_002865126.1 hypothetical protein -
  CJ12660_RS04670 (CJ12660_0898) - 881953..882684 (+) 732 WP_002861653.1 hypothetical protein -
  CJ12660_RS04675 (CJ12660_0899) - 882736..883107 (-) 372 WP_126267719.1 hypothetical protein -
  CJ12660_RS04680 (CJ12660_0900) - 883097..883660 (-) 564 WP_052787807.1 hypothetical protein -
  CJ12660_RS04685 (CJ12660_0901) - 883657..884319 (-) 663 WP_052787806.1 hypothetical protein -
  CJ12660_RS04690 (CJ12660_0902) CJE0566 884401..885054 (-) 654 WP_052787805.1 DNA/RNA non-specific endonuclease Regulator
  CJ12660_RS04695 (CJ12660_0903) - 885060..885767 (-) 708 WP_052805202.1 hypothetical protein -
  CJ12660_RS04700 (CJ12660_0904) - 885760..886548 (-) 789 WP_052787804.1 HipA family kinase -
  CJ12660_RS04705 (CJ12660_0905) - 886545..887279 (-) 735 WP_052787803.1 S24 family peptidase -
  CJ12660_RS09105 - 887391..887609 (+) 219 WP_002826741.1 hypothetical protein -
  CJ12660_RS04715 (CJ12660_0906) - 887771..888136 (-) 366 WP_002874369.1 hypothetical protein -
  CJ12660_RS04720 (CJ12660_0907) - 888179..889180 (+) 1002 WP_052788432.1 hypothetical protein -
  CJ12660_RS04725 (CJ12660_0908) - 889191..889841 (+) 651 WP_002871222.1 hypothetical protein -

Sequence


Protein


Download         Length: 217 a.a.        Molecular weight: 25493.10 Da        Isoelectric Point: 10.0127

>NTDB_id=288423 CJ12660_RS04690 WP_052787805.1 884401..885054(-) (CJE0566) [Campylobacter jejuni strain NCTC 12660]
MKKLIILSLLTTLALADYSQYKPSEDFAKHFTKQNCSQVLDKFYYLNCYDYNLKGTKAVAYKLEADNLKGEQIKKRPRFE
DDTNIPKKYRTTWSDYKNSGYDRGHTISNASMRKTTQAQRSTFLMSNITPQNPQINQKVWNKIEKRERQVALKLGSLEVL
NLVNYDNNPQRIRNQIAIPSSYTKILKGENFKECYQVPNHKVNDENIRKYKIDCDKI

Nucleotide


Download         Length: 654 bp        

>NTDB_id=288423 CJ12660_RS04690 WP_052787805.1 884401..885054(-) (CJE0566) [Campylobacter jejuni strain NCTC 12660]
ATGAAAAAACTTATAATCTTATCATTATTGACAACTCTAGCCTTAGCTGATTATAGCCAATACAAACCAAGTGAAGATTT
TGCTAAGCATTTTACTAAGCAAAACTGCTCACAAGTTTTGGATAAGTTTTATTATCTAAATTGTTATGATTATAATCTTA
AAGGCACTAAAGCTGTAGCTTATAAACTAGAAGCAGATAATCTAAAAGGCGAACAAATCAAAAAACGCCCACGCTTTGAA
GATGATACAAATATACCTAAAAAATACCGCACTACATGGAGTGATTATAAAAACAGCGGTTATGATAGAGGGCATACTAT
TTCTAATGCTTCAATGAGAAAAACAACTCAAGCCCAAAGAAGCACTTTTTTAATGAGTAATATTACTCCGCAAAATCCAC
AAATTAATCAAAAAGTATGGAATAAGATTGAAAAAAGAGAAAGACAAGTAGCTTTAAAACTTGGAAGTTTAGAGGTTTTG
AATTTAGTTAATTATGACAATAATCCACAAAGAATAAGAAATCAAATTGCCATTCCAAGCTCTTACACTAAGATTTTAAA
AGGCGAGAATTTTAAAGAATGTTACCAAGTGCCAAATCACAAAGTGAATGATGAGAATATAAGAAAATATAAGATTGATT
GTGATAAAATATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A5Z1E8P6

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

93.088

100

0.931

  CJE1441 Campylobacter jejuni RM1221

91.163

99.078

0.903


Multiple sequence alignment