Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   CDG57_RS12990 Genome accession   NZ_CP028800
Coordinates   2644626..2645051 (-) Length   141 a.a.
NCBI ID   WP_087539536.1    Uniprot ID   -
Organism   Acinetobacter junii strain WCHAJ59     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2639626..2650051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG57_RS12960 (CDG57_12950) - 2639710..2639979 (-) 270 WP_004637957.1 HPr family phosphocarrier protein -
  CDG57_RS12965 (CDG57_12955) rapZ 2639976..2640827 (-) 852 WP_004906708.1 RNase adapter RapZ -
  CDG57_RS12970 (CDG57_12960) panC 2640850..2641695 (-) 846 WP_005403727.1 pantoate--beta-alanine ligase -
  CDG57_RS12975 (CDG57_12965) panB 2641699..2642508 (-) 810 WP_005403726.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  CDG57_RS12980 (CDG57_12970) folK 2642548..2643036 (-) 489 WP_004960709.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  CDG57_RS12985 (CDG57_12975) pcnB 2643033..2644487 (-) 1455 WP_005403725.1 polynucleotide adenylyltransferase PcnB -
  CDG57_RS12990 (CDG57_12980) comEA 2644626..2645051 (-) 426 WP_087539536.1 ComEA family DNA-binding protein Machinery gene
  CDG57_RS12995 (CDG57_12985) mazG 2645020..2645826 (-) 807 WP_087539537.1 nucleoside triphosphate pyrophosphohydrolase -
  CDG57_RS13000 (CDG57_12990) - 2645925..2646698 (+) 774 WP_039047740.1 SDR family oxidoreductase -
  CDG57_RS13005 (CDG57_12995) - 2646738..2649044 (-) 2307 WP_087539539.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 16231.70 Da        Isoelectric Point: 10.6162

>NTDB_id=287811 CDG57_RS12990 WP_087539536.1 2644626..2645051(-) (comEA) [Acinetobacter junii strain WCHAJ59]
MILSKPRSRHNLFILILLWLGCYTSGYAQQFDQSYEKWKAQQQARDQQLAKQPNNSYYLSRPSQQNTKQFSSSINIRSDK
ISLNQANLEQLQTLNGVGQKKAQAIIEYRQKKGGFKTIDELMNVKGIGPKLLEKNKAKLIL

Nucleotide


Download         Length: 426 bp        

>NTDB_id=287811 CDG57_RS12990 WP_087539536.1 2644626..2645051(-) (comEA) [Acinetobacter junii strain WCHAJ59]
ATGATTTTGTCGAAGCCACGCAGCAGACATAATCTATTTATACTGATTTTACTATGGCTTGGGTGTTATACAAGTGGTTA
TGCGCAGCAATTTGATCAATCTTATGAAAAGTGGAAAGCTCAACAGCAAGCGCGTGACCAGCAGTTAGCTAAACAGCCCA
ACAATAGTTACTATTTATCAAGACCTAGTCAGCAAAACACCAAACAATTTTCATCTTCTATAAATATTCGGTCAGATAAA
ATTAGTTTGAATCAGGCAAATCTAGAACAGTTACAAACTTTGAATGGAGTGGGACAGAAAAAAGCTCAAGCAATCATTGA
ATACCGCCAAAAGAAGGGTGGTTTTAAAACAATAGATGAATTAATGAATGTAAAAGGAATCGGGCCAAAACTGCTTGAGA
AGAATAAAGCAAAGCTCATACTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(79-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

50.746

95.035

0.482
  comEA Acinetobacter baumannii D1279779

49.254

95.035

0.468
  comEA Acinetobacter baylyi ADP1

42.222

95.745

0.404

Multiple sequence alignment