Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AOY69_RS08975 Genome accession   NZ_CP028758
Coordinates   1928387..1929016 (+) Length   209 a.a.
NCBI ID   WP_001612760.1    Uniprot ID   A0A377CFT3
Organism   Escherichia coli strain A16     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1923387..1934016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY69_RS08955 (AOY69_09525) ycbZ 1923788..1925548 (-) 1761 WP_062883666.1 Lon protease family protein -
  AOY69_RS08960 (AOY69_09530) matP 1925734..1926186 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  AOY69_RS08965 (AOY69_09535) ompA 1926262..1927302 (-) 1041 WP_023307840.1 porin OmpA -
  AOY69_RS08970 (AOY69_09545) sulA 1927659..1928168 (-) 510 WP_000288706.1 SOS-induced cell division inhibitor SulA -
  AOY69_RS08975 (AOY69_09550) sxy/tfoX 1928387..1929016 (+) 630 WP_001612760.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AOY69_RS08980 (AOY69_09555) yccS 1928979..1931141 (-) 2163 WP_201479736.1 YccS family putative transporter -
  AOY69_RS08985 (AOY69_09560) yccF 1931151..1931597 (-) 447 WP_001261235.1 YccF domain-containing protein -
  AOY69_RS08990 (AOY69_09565) helD 1931720..1933774 (+) 2055 WP_086217534.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24146.03 Da        Isoelectric Point: 9.4081

>NTDB_id=287408 AOY69_RS08975 WP_001612760.1 1928387..1929016(+) (sxy/tfoX) [Escherichia coli strain A16]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSNGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=287408 AOY69_RS08975 WP_001612760.1 1928387..1929016(+) (sxy/tfoX) [Escherichia coli strain A16]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTATTTGCGATGGTTTCTAATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A377CFT3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment