Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   EHF40_RS07530 Genome accession   NZ_CP033907
Coordinates   1438607..1440592 (-) Length   661 a.a.
NCBI ID   WP_021299077.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain Duke-Large     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1433607..1445592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHF40_RS07505 (EHF40_07505) - 1433620..1434870 (-) 1251 WP_021299082.1 glutamate-5-semialdehyde dehydrogenase -
  EHF40_RS07510 (EHF40_07510) proB 1434863..1435684 (-) 822 WP_003052230.1 glutamate 5-kinase -
  EHF40_RS07515 (EHF40_07515) - 1435748..1437376 (-) 1629 WP_021299069.1 membrane protein -
  EHF40_RS07520 (EHF40_07520) - 1437381..1438115 (-) 735 WP_011528875.1 ABC transporter ATP-binding protein -
  EHF40_RS07525 (EHF40_07525) - 1438149..1438415 (-) 267 WP_002983572.1 bacteriocin immunity protein -
  EHF40_RS07530 (EHF40_07530) recP/tkt 1438607..1440592 (-) 1986 WP_021299077.1 transketolase Machinery gene
  EHF40_RS07535 (EHF40_07535) fsa 1440810..1441454 (-) 645 WP_002983569.1 fructose-6-phosphate aldolase -
  EHF40_RS07540 (EHF40_07540) - 1441576..1443075 (-) 1500 WP_021299060.1 helix-turn-helix domain-containing protein -
  EHF40_RS07545 (EHF40_07545) - 1443065..1444411 (-) 1347 WP_021299079.1 FAD/NAD(P)-binding oxidoreductase -
  EHF40_RS07550 (EHF40_07550) - 1444520..1445221 (-) 702 WP_011528880.1 MIP/aquaporin family protein -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 71398.13 Da        Isoelectric Point: 4.6233

>NTDB_id=285846 EHF40_RS07530 WP_021299077.1 1438607..1440592(-) (recP/tkt) [Streptococcus pyogenes strain Duke-Large]
MTFDAIDQLAVNTVRTLSMDAIQAANSGHPGLPMGAAPMAYVLWNHFMNINPKTSRNWSNRDRFILSAGHGSAMLYSLLH
LAGYDLTVEDLKNFRQWGSKTPGHPEVNHTDGVEATTGPLGQGIANAVGMAMAEAHLAAKFNKPGFDIVDHYTFALNGDG
DLMEGVSQEAASMAGHLKLGKLVLLYDSNDISLDGPTSMAFTEDVKGRFEAYGWQHILVKDGNDLEEIAAAIEAAKAETE
KPTIIEVKTIIGFGAEKQGTSAVHGAPLGAEGIAFAKKAYQWTHQDFEVPAEVTERFAQGLQARGEKAEQAWNDLFAAYE
AEYPELAAEYQKAFTNEAAQVELEAHELGSSMASRVSSQQAIQQISEQVASFWGGSADLSASNNTMVKAETDFQSGHYEG
RNIWFGVREFAMAAAMNGIALHGGTRVYGGTFFVFSNYLLPAVRMAALQNLPTVYVMTHDSIAVGEDGPTHEPIEQLASV
RSMPNLNVIRPADGNETNTAWKRAIAETDRPTMLVLTRQNLPVLEGTKELAEDGLNKGAYILSEAKGDLDGIIIATGSEV
KLAMDTQEALEAEGIHVRVVSMPSQNIFDEQSAEYKESILPAAVTKRLAIEAGSSFGWAKYVGLAGKTLTIDTWGASAPG
NRIFEEYGFTVANATELYKSL

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=285846 EHF40_RS07530 WP_021299077.1 1438607..1440592(-) (recP/tkt) [Streptococcus pyogenes strain Duke-Large]
ATGACATTTGATGCAATTGACCAGTTGGCAGTAAATACTGTCCGCACCCTATCAATGGATGCCATTCAAGCGGCAAATTC
TGGACACCCAGGCCTTCCAATGGGTGCTGCACCTATGGCCTACGTTCTTTGGAATCACTTCATGAACATTAATCCAAAAA
CAAGCCGTAATTGGTCAAACAGAGACCGTTTTATCCTATCAGCGGGACACGGAAGTGCTATGCTTTATAGCTTGTTACAC
TTAGCTGGTTATGATTTAACTGTAGAAGATTTAAAGAACTTCCGTCAATGGGGTTCTAAAACACCAGGTCACCCAGAAGT
TAATCATACCGATGGTGTGGAAGCAACTACAGGACCTCTTGGTCAAGGGATTGCGAATGCTGTTGGTATGGCCATGGCAG
AAGCTCACCTAGCAGCTAAATTTAACAAACCAGGCTTTGACATCGTTGATCACTATACCTTTGCTTTGAATGGTGACGGT
GACCTTATGGAAGGGGTCAGCCAAGAAGCAGCAAGTATGGCAGGACATTTAAAACTTGGGAAATTGGTCTTGCTATATGA
TTCAAACGACATCTCTCTTGATGGTCCAACCTCTATGGCTTTCACAGAAGATGTGAAAGGACGTTTTGAAGCTTATGGTT
GGCAACATATCCTTGTGAAAGACGGAAACGATTTAGAAGAAATTGCAGCTGCTATTGAAGCAGCTAAAGCTGAAACTGAG
AAACCAACCATCATCGAAGTTAAAACCATTATTGGTTTTGGTGCCGAAAAACAAGGAACTTCAGCTGTTCACGGCGCTCC
TCTTGGAGCAGAAGGCATTGCTTTTGCCAAAAAAGCTTACCAATGGACTCATCAAGATTTTGAAGTGCCTGCTGAAGTAA
CAGAGCGCTTTGCTCAAGGTCTTCAAGCGCGTGGTGAAAAAGCAGAACAAGCCTGGAATGACTTGTTTGCAGCTTATGAA
GCAGAATATCCAGAATTAGCAGCAGAATACCAAAAAGCCTTTACTAACGAAGCTGCTCAAGTAGAACTTGAAGCGCACGA
ACTTGGTAGTTCAATGGCGAGTCGTGTATCCAGTCAACAAGCCATCCAACAAATTTCAGAACAAGTAGCCTCTTTCTGGG
GTGGGTCAGCAGACCTTTCAGCTTCAAACAATACTATGGTTAAGGCTGAAACAGATTTCCAATCAGGTCACTACGAAGGC
CGTAACATCTGGTTTGGCGTTCGTGAATTTGCCATGGCTGCAGCCATGAACGGTATTGCCCTTCACGGCGGGACACGCGT
TTACGGCGGAACCTTCTTTGTCTTCTCAAACTATCTTCTTCCAGCTGTTCGTATGGCAGCGCTCCAAAATTTGCCAACAG
TTTATGTCATGACACATGATTCTATCGCTGTTGGTGAAGATGGGCCAACGCACGAACCAATTGAACAATTGGCAAGTGTT
CGCTCAATGCCTAACTTGAACGTTATTCGTCCAGCAGACGGTAACGAAACAAATACTGCTTGGAAACGTGCCATTGCTGA
AACAGATCGCCCAACTATGCTTGTATTGACGCGTCAAAACCTTCCAGTGCTTGAAGGAACAAAAGAATTGGCAGAAGATG
GTCTTAACAAAGGAGCTTACATTTTATCAGAAGCCAAAGGCGACCTTGATGGTATCATCATTGCAACAGGTTCAGAAGTG
AAACTGGCAATGGATACTCAAGAAGCTCTTGAAGCAGAAGGCATTCATGTGCGTGTGGTATCTATGCCATCACAAAATAT
CTTTGACGAACAGTCAGCAGAGTATAAAGAAAGCATCCTACCAGCAGCTGTGACTAAACGTCTCGCTATCGAAGCAGGTT
CAAGCTTTGGCTGGGCAAAATATGTCGGCCTAGCAGGAAAAACATTGACCATTGACACTTGGGGTGCTTCAGCTCCAGGA
AATCGTATCTTCGAAGAATATGGTTTCACTGTGGCAAATGCAACTGAGTTATACAAATCACTCTAG

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-522)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(6-335)

Transketolase, C-terminal domain (Transketolase_C)

(552-652)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

55.319

99.546

0.551