Detailed information NTG0284827

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: DA376_RS02130
• Genome accession: NZ_CP028437
• Coordinates: 414921..416069 (+)
• Length: 382 a.a.
• NCBI ID: WP_007410270.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain DR-08
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 409921..421069

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DA376_RS02110 (DA376_02110)	-	410324..411007 (-)	684	WP_032872874.1	ABC transporter ATP-binding protein	-
DA376_RS02115 (DA376_02115)	-	411022..412452 (-)	1431	WP_032872876.1	ABC transporter permease	-
DA376_RS02120 (DA376_02120)	-	412665..413348 (+)	684	WP_032872879.1	response regulator transcription factor	-
DA376_RS02125 (DA376_02125)	-	413335..414768 (+)	1434	WP_161503657.1	sensor histidine kinase	-
DA376_RS02130 (DA376_02130)	rapC	414921..416069 (+)	1149	WP_007410270.1	Rap family tetratricopeptide repeat protein	Regulator
DA376_RS02135 (DA376_02135)	phrC	416053..416172 (+)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
DA376_RS02140 (DA376_02140)	-	416323..416433 (-)	111	WP_369878517.1	YjcZ family sporulation protein	-
DA376_RS02145 (DA376_02145)	-	416513..417877 (-)	1365	WP_007609394.1	aspartate kinase	-
DA376_RS02150 (DA376_02150)	ceuB	418291..419244 (+)	954	WP_032872883.1	ABC transporter permease	Machinery gene
DA376_RS02155 (DA376_02155)	-	419234..420181 (+)	948	WP_014416905.1	iron chelate uptake ABC transporter family permease subunit	-
DA376_RS02160 (DA376_02160)	-	420175..420933 (+)	759	WP_007609404.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45475.70 Da
• Isoelectric Point: 4.9916

>NTDB_id=284827 DA376_RS02130 WP_007410270.1 414921..416069(+) (rapC) [Bacillus velezensis strain DR-08]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=284827 DA376_RS02130 WP_007410270.1 414921..416069(+) (rapC) [Bacillus velezensis strain DR-08]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTACCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCTGATTCGAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAGGGGCTTCTCGATTATTACGTCAATTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCATGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTGGAGCAGGACACATATAACGTCCGGATTATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTTGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAGATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.461	100	0.825
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568