Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | SM12261_RS00985 | Genome accession | NZ_CP028414 |
| Coordinates | 195976..196929 (+) | Length | 317 a.a. |
| NCBI ID | WP_000345104.1 | Uniprot ID | - |
| Organism | Streptococcus mitis NCTC 12261 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 190976..201929
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SM12261_RS00940 (SM12261_0182) | - | 191147..191512 (+) | 366 | WP_000286405.1 | DUF1033 family protein | - |
| SM12261_RS00945 (SM12261_0183) | comGA/cglA/cilD | 191588..192529 (+) | 942 | WP_000249545.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| SM12261_RS00950 (SM12261_0184) | comGB/cglB | 192477..193493 (+) | 1017 | WP_004238896.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| SM12261_RS00955 (SM12261_0185) | comGC/cglC | 193495..193818 (+) | 324 | WP_000738641.1 | comG operon protein ComGC | Machinery gene |
| SM12261_RS00960 (SM12261_0186) | comGD/cglD | 193781..194215 (+) | 435 | WP_029689647.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| SM12261_RS00965 (SM12261_0187) | comGE/cglE | 194178..194480 (+) | 303 | WP_045597458.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| SM12261_RS00970 (SM12261_0188) | comGF/cglF | 194443..194904 (+) | 462 | WP_000250509.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| SM12261_RS00975 (SM12261_0189) | comGG/cglG | 194882..195295 (+) | 414 | WP_000265657.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| SM12261_RS00980 (SM12261_0190) | - | 195328..195915 (+) | 588 | WP_000679792.1 | class I SAM-dependent methyltransferase | - |
| SM12261_RS00985 (SM12261_0191) | comYH | 195976..196929 (+) | 954 | WP_000345104.1 | class I SAM-dependent methyltransferase | Machinery gene |
| SM12261_RS00990 (SM12261_0192) | - | 196979..198169 (+) | 1191 | WP_000167778.1 | acetate kinase | - |
| SM12261_RS00995 (SM12261_0193) | rnpA | 198319..198690 (+) | 372 | WP_000739243.1 | ribonuclease P protein component | - |
| SM12261_RS01000 (SM12261_0194) | - | 198665..199489 (+) | 825 | WP_004238894.1 | membrane protein insertase YidC | - |
| SM12261_RS01005 (SM12261_0195) | jag | 199507..200496 (+) | 990 | WP_000260003.1 | RNA-binding cell elongation regulator Jag/EloR | - |
| SM12261_RS01010 (SM12261_0196) | - | 200547..201170 (+) | 624 | WP_000932648.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 35637.87 Da Isoelectric Point: 4.2748
>NTDB_id=284619 SM12261_RS00985 WP_000345104.1 195976..196929(+) (comYH) [Streptococcus mitis NCTC 12261]
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELEQVKENNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFKEEEITILEMGSGMGILGATFLTSLAKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVAARHQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SDLLKGWLKEEANLVAMISLPENLFANAKQSKTIFILQKKSEIPVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELEQVKENNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFKEEEITILEMGSGMGILGATFLTSLAKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVAARHQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SDLLKGWLKEEANLVAMISLPENLFANAKQSKTIFILQKKSEIPVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI
Nucleotide
Download Length: 954 bp
>NTDB_id=284619 SM12261_RS00985 WP_000345104.1 195976..196929(+) (comYH) [Streptococcus mitis NCTC 12261]
ATGGATTTTGAAAAAATTGAACAAGCATATACCTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
TTTTTATGACGCCTTGGTGGAGCAAAACAGCATCTATTTGGATGGTGAAACTGAGCTAGAGCAGGTCAAGGAGAACAATC
AAGCCCTTAAGCGCTTAGCGCTTCGCAAGGAAGAGTGGCTCAAGACCTACCAGTTTCTTTTGATGAAGGCAGGACAAACG
GAGCCTTTACAGGCCAATCACCAGTTTACGCCAGATGCTATTGCTTTACTTTTGGTGTTTATTGTGGAAGAGCTGTTTAA
AGAGGAGGAAATTACTATCCTCGAAATGGGTTCTGGGATGGGAATTCTGGGCGCTACTTTCTTGACTTCGCTTGCTAAAA
AAGTGGATTACTTGGGAATGGAAGTAGATGATTTGCTGATTGATTTGGCAGCTAGCATGGCAGATGTGATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGTCCACAAATGCTCAAAGAAAGCGATGTGGTCATCAGCGACTTGCCTGTTGG
CTATTATCCTGATGATGCCGTTGCAGCGCGCCATCAAGTAGCCTCTAGTCAAGAACATACCTACGCCCATCACTTGCTCA
TGGAACAAGGACTTAAGTATCTCAAATCAGATGGCTATGCTATTTTTCTAGCTCCGAGTGATTTGTTGACCAGTCCTCAA
AGTGACTTATTGAAAGGGTGGTTGAAAGAAGAGGCAAATCTAGTTGCCATGATCAGTCTCCCTGAAAATCTCTTTGCTAA
TGCTAAACAATCCAAGACGATTTTTATCTTACAAAAGAAAAGTGAAATACCAGTAGAACCCTTTGTTTATCCACTTGCTA
GCCTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA
ATGGATTTTGAAAAAATTGAACAAGCATATACCTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
TTTTTATGACGCCTTGGTGGAGCAAAACAGCATCTATTTGGATGGTGAAACTGAGCTAGAGCAGGTCAAGGAGAACAATC
AAGCCCTTAAGCGCTTAGCGCTTCGCAAGGAAGAGTGGCTCAAGACCTACCAGTTTCTTTTGATGAAGGCAGGACAAACG
GAGCCTTTACAGGCCAATCACCAGTTTACGCCAGATGCTATTGCTTTACTTTTGGTGTTTATTGTGGAAGAGCTGTTTAA
AGAGGAGGAAATTACTATCCTCGAAATGGGTTCTGGGATGGGAATTCTGGGCGCTACTTTCTTGACTTCGCTTGCTAAAA
AAGTGGATTACTTGGGAATGGAAGTAGATGATTTGCTGATTGATTTGGCAGCTAGCATGGCAGATGTGATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGTCCACAAATGCTCAAAGAAAGCGATGTGGTCATCAGCGACTTGCCTGTTGG
CTATTATCCTGATGATGCCGTTGCAGCGCGCCATCAAGTAGCCTCTAGTCAAGAACATACCTACGCCCATCACTTGCTCA
TGGAACAAGGACTTAAGTATCTCAAATCAGATGGCTATGCTATTTTTCTAGCTCCGAGTGATTTGTTGACCAGTCCTCAA
AGTGACTTATTGAAAGGGTGGTTGAAAGAAGAGGCAAATCTAGTTGCCATGATCAGTCTCCCTGAAAATCTCTTTGCTAA
TGCTAAACAATCCAAGACGATTTTTATCTTACAAAAGAAAAGTGAAATACCAGTAGAACCCTTTGTTTATCCACTTGCTA
GCCTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
55.272 |
98.738 |
0.546 |
| comYH | Streptococcus mutans UA159 |
54.952 |
98.738 |
0.543 |