Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   HPSH_RS05795 Genome accession   NC_010698
Coordinates   1213123..1214172 (+) Length   349 a.a.
NCBI ID   WP_000115521.1    Uniprot ID   -
Organism   Helicobacter pylori Shi470     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1208123..1219172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPSH_RS05780 (HPSH_06150) - 1208712..1210526 (+) 1815 WP_000926189.1 hypothetical protein -
  HPSH_RS05785 (HPSH_06155) asd 1210706..1211746 (-) 1041 WP_000860909.1 aspartate-semialdehyde dehydrogenase -
  HPSH_RS05790 (HPSH_06160) hisS 1211733..1213061 (-) 1329 WP_000632529.1 histidine--tRNA ligase -
  HPSH_RS05795 (HPSH_06165) waaF 1213123..1214172 (+) 1050 WP_000115521.1 lipopolysaccharide heptosyltransferase II Regulator
  HPSH_RS05800 (HPSH_06170) - 1214365..1214691 (-) 327 WP_000744162.1 hypothetical protein -
  HPSH_RS05805 (HPSH_06180) fusA 1215233..1217311 (-) 2079 WP_000101894.1 elongation factor G -
  HPSH_RS05810 (HPSH_06185) rpsG 1217323..1217790 (-) 468 WP_001254365.1 30S ribosomal protein S7 -
  HPSH_RS05815 (HPSH_06190) rpsL 1217806..1218213 (-) 408 WP_001142321.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39598.43 Da        Isoelectric Point: 9.7445

>NTDB_id=28386 HPSH_RS05795 WP_000115521.1 1213123..1214172(+) (waaF) [Helicobacter pylori Shi470]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNARFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAVISAPKEYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAALLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLFN
NAYNLCGKTSIEELIEHIAILDLFITNDSGPMHVAASTQTPLIALFGPTDERETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=28386 HPSH_RS05795 WP_000115521.1 1213123..1214172(+) (waaF) [Helicobacter pylori Shi470]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCGTTTCATCTTAGTGGGCCCACAAATGACTTGCGAACTCTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTATTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTTAGCCATGCGGTAATTTCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTGAAAAAAGAATTGGATAAAAAAAGCGTTTTGCCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGCTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAGATTTTAAAACTCATCAAAGGTTTATTAAAAAACCCTTTATTATTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGCACATCGCTATTTTGGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCCAGCACACAAACCCCCTTAATCGCTCTTTTTGGTCCCACTGATGAAAGAGAAA
CTCGCCCTTATAAAGCTCAAAAAACGATCGTGTTGAACCACCACCTAAGCTGTTCGCCATGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.353

97.421

0.364

Multiple sequence alignment