Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HPSH_RS04385 Genome accession   NC_010698
Coordinates   910570..910830 (-) Length   86 a.a.
NCBI ID   WP_000602756.1    Uniprot ID   -
Organism   Helicobacter pylori Shi470     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 905570..915830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPSH_RS08650 (HPSH_04605) - 906004..906132 (-) 129 WP_000243255.1 hypothetical protein -
  HPSH_RS04375 (HPSH_04610) - 906132..908066 (-) 1935 WP_000277569.1 type IA DNA topoisomerase -
  HPSH_RS04380 (HPSH_04615) - 908059..910557 (-) 2499 WP_000478385.1 VirB4 family type IV secretion system protein -
  HPSH_RS04385 (HPSH_04620) comB3 910570..910830 (-) 261 WP_000602756.1 hypothetical protein Machinery gene
  HPSH_RS04390 (HPSH_04625) - 910831..911133 (-) 303 WP_000649843.1 TrbC/VirB2 family protein -
  HPSH_RS04400 (HPSH_04635) - 911123..913038 (-) 1916 Protein_859 toprim domain-containing protein -
  HPSH_RS04405 (HPSH_04640) - 913049..913813 (-) 765 WP_000667751.1 hypothetical protein -
  HPSH_RS04410 (HPSH_04645) - 913835..915454 (-) 1620 WP_001123897.1 PBECR2 nuclease fold domain-containing protein -
  HPSH_RS08245 (HPSH_04650) - 915459..915701 (+) 243 WP_001218336.1 hypothetical protein -

Sequence

Protein


Download         Length: 86 a.a.        Molecular weight: 10154.04 Da        Isoelectric Point: 4.6082

>NTDB_id=28382 HPSH_RS04385 WP_000602756.1 910570..910830(-) (comB3) [Helicobacter pylori Shi470]
MILNYVETINVREISKKEKFLKLNMNSWIISFLSASFLFVWSLLYGVVLLVALITMFYILEFFDEDITNIILANLTLKND
TKEYYA

Nucleotide


Download         Length: 261 bp        

>NTDB_id=28382 HPSH_RS04385 WP_000602756.1 910570..910830(-) (comB3) [Helicobacter pylori Shi470]
ATGATTTTAAATTATGTAGAGACCATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAAGCTTAATATGAATAG
TTGGATCATTTCTTTTTTGAGCGCTTCTTTCTTATTTGTGTGGTCTTTATTATATGGCGTGGTGCTATTGGTGGCATTAA
TAACAATGTTTTACATACTAGAATTTTTTGATGAAGATATTACAAACATTATTTTGGCAAACCTAACGCTAAAAAATGAC
ACTAAAGAATATTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

44.828

100

0.453

Multiple sequence alignment