Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   D9Y32_RS18985 Genome accession   NZ_CP033218
Coordinates   3660310..3661227 (-) Length   305 a.a.
NCBI ID   WP_020450933.1    Uniprot ID   -
Organism   Bacillus licheniformis strain TCCC 11148     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3655310..3666227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9Y32_RS18955 (D9Y32_18980) - 3655733..3655861 (-) 129 Protein_3712 hypothetical protein -
  D9Y32_RS18960 (D9Y32_18985) - 3656037..3656699 (+) 663 WP_009328832.1 TerC family protein -
  D9Y32_RS18965 (D9Y32_18990) spxA 3656922..3657317 (-) 396 WP_009328833.1 transcriptional regulator SpxA -
  D9Y32_RS18970 (D9Y32_18995) - 3657495..3658073 (-) 579 WP_061576209.1 GNAT family N-acetyltransferase -
  D9Y32_RS18975 (D9Y32_19000) - 3658304..3659227 (-) 924 WP_011197769.1 ABC transporter ATP-binding protein -
  D9Y32_RS18980 (D9Y32_19005) - 3659229..3660296 (-) 1068 WP_003180615.1 ABC transporter ATP-binding protein -
  D9Y32_RS18985 (D9Y32_19010) amiD 3660310..3661227 (-) 918 WP_020450933.1 ABC transporter permease Regulator
  D9Y32_RS18990 (D9Y32_19015) - 3661232..3662167 (-) 936 WP_003180611.1 ABC transporter permease -
  D9Y32_RS18995 (D9Y32_19020) - 3662263..3663888 (-) 1626 WP_003180610.1 peptide ABC transporter substrate-binding protein -
  D9Y32_RS19005 (D9Y32_19030) trpS 3664626..3665618 (+) 993 WP_003180607.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33938.26 Da        Isoelectric Point: 8.8249

>NTDB_id=282768 D9Y32_RS18985 WP_020450933.1 3660310..3661227(-) (amiD) [Bacillus licheniformis strain TCCC 11148]
MQQIPKDMFEPAAVDHSEAEKISKKNLSFWTDVFLRFKENKLALFGLVVLILIALMAIFAPVFSSFQYEETDLTNANQPP
SGEHWFGTDDLGRDVFVRTWVGARISLTIGLAAALIDVLIGVIWGAISGIRGGRTDEIMMRIADVLWAIPSLLMTILLLV
VMGKGLITMIVAMVITGWINMARIVRGQVLQLKNQEFVLASRTLGAKNSRIIRKHLLPNIMSPILVTMTLTVPTAIFYEA
FLSYLGLGVPQPLASWGTMATDGVQGLEYYPWRLFFPATFICLTMFAFNVIGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=282768 D9Y32_RS18985 WP_020450933.1 3660310..3661227(-) (amiD) [Bacillus licheniformis strain TCCC 11148]
ATGCAGCAAATACCAAAAGACATGTTTGAACCTGCAGCTGTTGACCATAGCGAAGCCGAAAAGATCTCAAAGAAAAACCT
TTCTTTTTGGACAGACGTATTCTTGAGATTTAAAGAAAACAAGCTGGCGCTGTTTGGACTGGTGGTTCTGATCCTGATCG
CTCTGATGGCTATCTTCGCGCCGGTGTTCTCAAGCTTTCAATATGAAGAAACAGATTTAACGAATGCGAACCAGCCGCCA
AGCGGTGAGCACTGGTTTGGAACAGATGACCTTGGAAGGGACGTATTCGTCCGTACATGGGTCGGCGCCCGCATCTCGCT
GACAATCGGACTCGCTGCTGCGCTGATCGACGTTTTGATCGGTGTGATATGGGGTGCGATTTCCGGCATCAGAGGCGGAC
GTACGGATGAAATTATGATGAGAATAGCAGATGTTTTATGGGCGATTCCTTCTTTATTAATGACCATCCTGCTGCTCGTT
GTTATGGGAAAAGGCCTGATCACGATGATCGTGGCGATGGTTATTACGGGCTGGATCAACATGGCGAGAATCGTCCGGGG
CCAAGTACTCCAGCTTAAAAATCAGGAGTTCGTACTCGCCTCAAGAACATTGGGAGCGAAAAACTCGCGCATTATCAGAA
AGCACCTGCTGCCCAACATCATGAGCCCGATCTTGGTCACCATGACATTAACCGTTCCTACGGCTATTTTCTATGAGGCG
TTTTTAAGCTACCTCGGCCTCGGGGTTCCGCAGCCGCTTGCAAGCTGGGGAACGATGGCAACAGACGGTGTTCAGGGATT
GGAATACTACCCTTGGCGCCTGTTCTTCCCGGCTACTTTTATCTGTCTGACCATGTTTGCATTCAACGTTATCGGCGACG
GACTGCGCGACGCTTTAGATCCGAAGCTGCGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

35.599

100

0.361