Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   D9Y32_RS16170 Genome accession   NZ_CP033218
Coordinates   3136817..3137179 (-) Length   120 a.a.
NCBI ID   WP_003181796.1    Uniprot ID   A0A6I1MJA4
Organism   Bacillus licheniformis strain TCCC 11148     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3131817..3142179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9Y32_RS16145 (D9Y32_16175) flhB 3133324..3134403 (-) 1080 WP_003181806.1 flagellar biosynthesis protein FlhB -
  D9Y32_RS16150 (D9Y32_16180) fliR 3134403..3135179 (-) 777 WP_011197977.1 flagellar biosynthetic protein FliR -
  D9Y32_RS16155 (D9Y32_16185) fliQ 3135187..3135456 (-) 270 WP_003181801.1 flagellar biosynthesis protein FliQ -
  D9Y32_RS16160 (D9Y32_16190) fliP 3135472..3136137 (-) 666 WP_009328512.1 flagellar type III secretion system pore protein FliP -
  D9Y32_RS16165 (D9Y32_16195) fliZ 3136130..3136804 (-) 675 WP_009328513.1 flagella biosynthesis regulatory protein FliZ -
  D9Y32_RS16170 (D9Y32_16200) pilH 3136817..3137179 (-) 363 WP_003181796.1 response regulator Machinery gene
  D9Y32_RS16175 (D9Y32_16205) fliY 3137206..3138339 (-) 1134 WP_003181794.1 flagellar motor switch phosphatase FliY -
  D9Y32_RS16180 (D9Y32_16210) fliM 3138329..3139327 (-) 999 WP_003181789.1 flagellar motor switch protein FliM -
  D9Y32_RS16185 (D9Y32_16215) fliL 3139363..3139794 (-) 432 WP_009328514.1 flagellar basal body-associated protein FliL -
  D9Y32_RS16190 (D9Y32_16220) - 3139791..3140006 (-) 216 WP_003181786.1 flagellar FlbD family protein -
  D9Y32_RS16195 (D9Y32_16225) flgG 3140049..3140840 (-) 792 WP_003181784.1 flagellar basal body rod protein FlgG -
  D9Y32_RS16200 (D9Y32_16230) flgD 3140868..3141335 (-) 468 WP_003181782.1 flagellar hook assembly protein FlgD -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13280.60 Da        Isoelectric Point: 4.5762

>NTDB_id=282746 D9Y32_RS16170 WP_003181796.1 3136817..3137179(-) (pilH) [Bacillus licheniformis strain TCCC 11148]
MAYKILVVDDAAFMRMMIKDILVKNGFEVVAEAQDGAQAVEKYKEHSPDLVTMDITMPEKDGITALKEIKEIDPQAKIIM
CSAMGQQSMVIDAIQAGAKDFIVKPFQADRVMEAINKTLS

Nucleotide


Download         Length: 363 bp        

>NTDB_id=282746 D9Y32_RS16170 WP_003181796.1 3136817..3137179(-) (pilH) [Bacillus licheniformis strain TCCC 11148]
ATGGCTTACAAGATTTTAGTAGTTGATGATGCAGCATTTATGAGAATGATGATTAAAGATATTTTGGTGAAAAACGGCTT
TGAAGTCGTCGCAGAAGCGCAAGACGGGGCACAGGCTGTTGAAAAGTATAAAGAGCATTCACCTGATCTTGTCACAATGG
ATATCACGATGCCGGAAAAAGACGGAATCACGGCTCTTAAAGAAATCAAGGAAATCGATCCGCAGGCAAAAATCATCATG
TGTTCGGCAATGGGCCAGCAATCGATGGTTATCGACGCCATCCAGGCGGGAGCGAAAGACTTTATCGTCAAACCGTTCCA
GGCTGACCGCGTCATGGAAGCCATCAATAAAACGCTAAGCTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I1MJA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

38.136

98.333

0.375