Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   LPC_RS05060 Genome accession   NC_009494
Coordinates   1109341..1110405 (+) Length   354 a.a.
NCBI ID   WP_011946022.1    Uniprot ID   -
Organism   Legionella pneumophila str. Corby     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1104341..1115405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPC_RS05050 (LPC_2366) - 1105381..1107765 (-) 2385 WP_011946019.1 penicillin-binding protein 1A -
  LPC_RS05055 (LPC_2365) ravI 1107917..1108924 (-) 1008 WP_011946020.1 Dot/Icm T4SS effector RavI -
  LPC_RS05060 (LPC_2363) pilM 1109341..1110405 (+) 1065 WP_011946022.1 type IV pilus assembly protein PilM Machinery gene
  LPC_RS05065 (LPC_2362) pilN 1110409..1110957 (+) 549 WP_011213354.1 PilN domain-containing protein Machinery gene
  LPC_RS05070 (LPC_2361) pilO 1110971..1111570 (+) 600 WP_011213355.1 type 4a pilus biogenesis protein PilO Machinery gene
  LPC_RS05075 (LPC_2360) pilP 1111567..1112151 (+) 585 WP_011213356.1 pilus assembly protein PilP Machinery gene
  LPC_RS05080 (LPC_2359) pilQ 1112155..1114251 (+) 2097 WP_011946023.1 type IV pilus secretin PilQ Machinery gene
  LPC_RS05085 (LPC_2358) aroK 1114698..1115225 (+) 528 WP_010946667.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38818.82 Da        Isoelectric Point: 5.0367

>NTDB_id=28223 LPC_RS05060 WP_011946022.1 1109341..1110405(+) (pilM) [Legionella pneumophila str. Corby]
MLKLLKPKHRSILGIDISSSAVKILEISGSGEDICVEGYGREEIPTSALEGNMIKDVDVVANCIKKLVERLRFTSKNVAL
AVPDSAVISKVVQINEGLTDLEMEELVVIEADKYIPYPIDEINLDFEVLGHSAKSSSLLDVLIVASRAENVNTRVEAAHR
AGLEPKVVDVESYAVERSVQQIAQELPASGQDKIVAIVDIGANYTHLFVLHGMRLIFSREEKFGGMQLVEAIAEHYHMNL
EQAIALKNQGKLPEDYESAVLEPFKDMILLQIKRTLQFFYSTSQHGFVDHILLAGGMARQPGLAALIQEQLGVTTTVANP
LSHMSFGKKVNLDVINSDAPTLMVACGLALRHVE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=28223 LPC_RS05060 WP_011946022.1 1109341..1110405(+) (pilM) [Legionella pneumophila str. Corby]
GTGCTCAAATTGCTTAAACCTAAGCATCGTTCAATTCTTGGCATTGACATCAGTTCTTCCGCTGTGAAAATTTTGGAAAT
ATCAGGTTCCGGAGAGGACATTTGTGTTGAAGGATATGGTCGGGAAGAAATACCAACCTCTGCTCTTGAAGGAAATATGA
TCAAGGATGTCGATGTAGTAGCGAATTGCATCAAAAAATTGGTAGAAAGATTGAGGTTTACATCTAAAAATGTGGCATTG
GCTGTGCCTGATTCAGCTGTTATCAGTAAAGTAGTGCAAATTAATGAAGGATTGACTGATCTTGAAATGGAGGAGCTTGT
CGTTATTGAGGCGGATAAGTATATCCCTTACCCAATAGATGAAATAAACCTGGATTTTGAAGTGTTAGGCCATTCAGCCA
AGAGCTCATCACTGCTTGATGTTTTAATCGTCGCATCAAGGGCAGAAAACGTTAATACCCGTGTTGAAGCAGCCCATAGA
GCAGGGCTGGAACCCAAAGTTGTTGACGTTGAATCTTATGCAGTAGAGCGTTCAGTACAACAAATTGCGCAAGAATTACC
AGCAAGTGGGCAAGACAAAATTGTTGCAATAGTAGATATTGGAGCCAACTATACTCACTTATTTGTTTTGCATGGTATGC
GACTAATCTTTTCAAGAGAAGAAAAATTTGGAGGTATGCAACTTGTTGAAGCTATTGCAGAGCACTATCATATGAATTTG
GAGCAGGCTATTGCCCTAAAAAATCAGGGTAAACTACCGGAGGACTACGAATCTGCTGTATTAGAACCTTTTAAGGACAT
GATTCTTTTGCAGATCAAACGTACTTTGCAGTTTTTTTATTCAACCAGTCAACATGGATTTGTAGACCATATTTTATTGG
CGGGAGGAATGGCAAGACAACCAGGATTGGCGGCGCTTATTCAAGAACAGTTAGGAGTGACTACTACAGTGGCAAATCCA
CTATCCCATATGTCTTTTGGTAAAAAAGTGAATTTGGATGTGATTAACAGTGATGCACCTACACTGATGGTGGCTTGTGG
GTTGGCTTTGAGGCATGTCGAGTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-352)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Legionella pneumophila strain ERS1305867

99.435

100

0.994
  comM Acinetobacter nosocomialis M2

42.373

100

0.424
  pilM Acinetobacter baumannii D1279779

42.09

100

0.421
  comM Acinetobacter baylyi ADP1

41.176

100

0.415

Multiple sequence alignment