Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL-C   Type   Machinery gene
Locus tag   UTEX3055_RS00420 Genome accession   NZ_CP033061
Coordinates   91999..94785 (+) Length   928 a.a.
NCBI ID   WP_011377831.1    Uniprot ID   Q31PH5
Organism   Synechococcus elongatus UTEX 3055     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 86999..99785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UTEX3055_RS00400 - 87202..87837 (-) 636 WP_126146618.1 hypothetical protein -
  UTEX3055_RS00405 - 87956..88717 (+) 762 WP_126146619.1 YebC/PmpR family DNA-binding transcriptional regulator -
  UTEX3055_RS14495 - 88718..88930 (+) 213 WP_152034121.1 hypothetical protein -
  UTEX3055_RS00410 - 88979..89461 (+) 483 WP_011242842.1 chemotaxis protein CheW -
  UTEX3055_RS00415 - 89477..91996 (+) 2520 WP_126146620.1 methyl-accepting chemotaxis protein -
  UTEX3055_RS00420 pilL-C 91999..94785 (+) 2787 WP_011377831.1 hybrid sensor histidine kinase/response regulator Machinery gene
  UTEX3055_RS00425 - 94789..95025 (+) 237 WP_011377830.1 hypothetical protein -
  UTEX3055_RS00430 - 95672..96445 (+) 774 WP_126146621.1 response regulator transcription factor -
  UTEX3055_RS00435 - 96458..97699 (+) 1242 WP_126146622.1 ATP-binding protein -
  UTEX3055_RS00440 - 97714..98445 (+) 732 WP_126146623.1 pseudouridine synthase -
  UTEX3055_RS00445 - 98464..99063 (+) 600 WP_011377828.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 928 a.a.        Molecular weight: 102825.13 Da        Isoelectric Point: 4.4486

>NTDB_id=281689 UTEX3055_RS00420 WP_011377831.1 91999..94785(+) (pilL-C) [Synechococcus elongatus UTEX 3055]
MSSTSDNVLRSLFLRETRENLQLLTQMIGQMEAGLPDAKTFADASRAAHSLKGGAALLKFETFRQLAAGLETCLSLLSEA
ELPDYEVSLPLFQRAAALLITATDRIEAGVEEQAVVPEEGNPLIEQLQVLQEMLQAAVQVPPDQSAVTSTLEDLLTQDFE
TVLLPPTPDLEQTLDQLLGDLEETPSPIAGQGSDGDRPALEDLNFDLEDWIEASEEESETVEIDIVAQVKALEAAIADLT
QHPHEQPLSLGIKDDILSAVIQAAPRLPVALTLEPVAKARTQDNGKTPVVFEQTLRVPVRQLDNLSNLVGEIVVSRNTLE
SDQSHLRETLENLMLQVHQLGDLGERMRELYERSLLETALAARRQLVGSSTAAGSAGASTFPTEQFDDLELDRFSGFHSI
SQEMMELLVRLREAASDIDFMVNEPFDQLTRNFQQITLQLQSELNQTRMVPFSDLTDQLPRAVREISRRCGKGARLEIEG
KDILIDKMILQKLQAPMTHLINNALSHGIETAEIRQYRNKSAEGTLVVRASLQGNRTLITVTDDGAGIDAEQVKLKALAR
GLITPEEAAGMRVREIYELLFRPGFSTRDQADELAGRGVGLDVVRRALHEIQGEIVVDSELGKGTTFTFRLPLTLSITKA
LTCLHERARLAFPMDSVEEMLDIPQQRLAMDPQGQLRLDWHNLSLPVFPLSSLLDFHLPFGRSRYYNSLGDDGVVSIVVL
RNDNEYLAVQTDQIEGEREIVIKQIEGPIAKPLGILGITVRSDGQVMPIVDVLELFDIAYGRVRQRQVAPVAPSAGETRT
NTEPMVLIVDDSITVRELLSMTFKKAGYVVEQARNGQEALEKLYSGLPCDLVFCDIEMPKMNGLELLERLQADPKLRSLP
VAMLTSRGADRHRQIAAHLGARAYFTKPYLEEQLLEASARLRNGERLI

Nucleotide


Download         Length: 2787 bp        

>NTDB_id=281689 UTEX3055_RS00420 WP_011377831.1 91999..94785(+) (pilL-C) [Synechococcus elongatus UTEX 3055]
ATGTCGTCCACCAGTGATAACGTTTTGCGATCGCTGTTTCTACGAGAAACGCGTGAAAATCTCCAGCTGCTGACCCAGAT
GATTGGCCAGATGGAAGCTGGGCTGCCGGATGCAAAAACCTTTGCAGACGCTTCGCGGGCCGCGCATTCGCTCAAGGGTG
GAGCCGCCCTGCTCAAGTTCGAAACCTTCCGGCAACTGGCAGCTGGACTCGAGACTTGCCTGTCTCTGCTATCTGAAGCC
GAGTTGCCCGACTACGAGGTGAGTCTCCCGCTGTTTCAACGGGCCGCCGCGCTGCTGATTACGGCGACCGATCGCATTGA
AGCGGGCGTTGAAGAGCAGGCTGTGGTGCCCGAGGAAGGGAACCCCCTGATTGAACAGCTCCAGGTTTTGCAGGAGATGC
TGCAGGCAGCTGTGCAAGTGCCACCGGATCAATCCGCCGTTACCAGCACGCTCGAAGACTTGCTGACCCAAGATTTTGAG
ACTGTCTTACTGCCGCCGACTCCTGATTTGGAGCAGACCCTCGATCAGCTCCTGGGCGACCTCGAGGAAACTCCCAGCCC
GATCGCTGGCCAGGGAAGCGACGGCGATCGCCCAGCTTTAGAGGACCTCAACTTTGACCTCGAGGACTGGATTGAGGCCA
GCGAAGAAGAGTCTGAGACGGTCGAAATCGACATTGTGGCCCAGGTCAAAGCCCTGGAAGCTGCGATCGCTGACTTGACG
CAGCACCCCCACGAGCAGCCCCTCAGCTTAGGCATCAAGGACGACATTCTGAGTGCGGTCATCCAAGCCGCTCCCCGTCT
GCCGGTGGCCCTGACGCTAGAGCCAGTGGCTAAGGCCCGTACCCAGGACAATGGCAAAACCCCCGTTGTCTTTGAACAGA
CTCTGCGGGTGCCGGTGCGTCAGTTGGATAACCTCAGCAACCTAGTCGGGGAGATTGTCGTCAGCCGGAATACCCTCGAA
AGCGATCAGTCCCACCTACGGGAAACCCTCGAAAACCTGATGCTACAGGTGCACCAGCTGGGTGATTTGGGTGAGCGGAT
GCGGGAGCTCTACGAGCGATCGCTTCTGGAAACTGCCCTCGCTGCACGTCGCCAACTAGTTGGTAGTTCTACAGCCGCTG
GCTCTGCCGGAGCTTCGACCTTTCCCACCGAGCAATTCGACGACCTCGAACTCGATCGCTTTAGTGGTTTCCATTCCATT
TCTCAAGAAATGATGGAATTGTTAGTCCGTCTGCGCGAGGCAGCCTCGGACATTGACTTCATGGTCAATGAACCCTTCGA
CCAACTGACCCGCAACTTCCAGCAAATTACCCTGCAGTTGCAAAGCGAGTTGAACCAGACTCGAATGGTCCCCTTCTCGG
ACCTGACGGATCAACTGCCACGGGCTGTCCGCGAAATCTCACGGCGCTGTGGCAAGGGTGCCCGTCTAGAGATCGAAGGG
AAAGACATCTTGATTGACAAGATGATCCTGCAGAAACTGCAGGCGCCCATGACTCACCTGATCAACAACGCCCTCAGTCA
TGGCATTGAAACGGCAGAAATTCGCCAATACCGCAATAAATCAGCGGAGGGAACCCTGGTCGTTCGTGCCTCACTCCAGG
GCAATCGGACCCTAATCACTGTTACCGATGATGGGGCCGGGATCGATGCTGAGCAGGTCAAGCTCAAAGCTTTGGCACGG
GGTTTGATCACCCCAGAAGAAGCCGCAGGGATGCGGGTGCGGGAGATCTATGAACTCCTGTTCCGACCCGGCTTCAGTAC
CCGAGATCAGGCCGATGAATTGGCGGGCCGCGGGGTGGGGCTAGATGTGGTTCGCCGGGCGCTCCATGAAATTCAGGGCG
AGATCGTGGTGGATTCGGAGCTGGGGAAAGGGACAACCTTTACCTTCCGCTTGCCCCTCACTCTCTCGATTACCAAGGCT
TTGACCTGCCTCCACGAACGGGCGCGTTTGGCCTTCCCGATGGATAGCGTTGAGGAAATGCTGGATATTCCCCAGCAGCG
CCTCGCGATGGATCCCCAGGGGCAGTTGCGCCTGGATTGGCACAATTTGTCGCTCCCCGTCTTCCCGCTCTCATCCCTCC
TCGACTTCCATCTGCCGTTTGGGCGATCGCGCTATTACAACAGTCTGGGCGATGACGGTGTCGTCTCGATTGTCGTTCTG
CGTAATGACAACGAGTACCTCGCCGTTCAGACCGATCAGATTGAAGGGGAACGGGAAATTGTGATCAAGCAGATCGAAGG
TCCGATCGCCAAACCCCTCGGGATCTTGGGCATCACCGTCCGCTCTGACGGTCAGGTCATGCCGATCGTGGACGTCTTGG
AACTGTTTGATATTGCCTACGGCCGCGTCCGTCAGCGTCAAGTAGCCCCCGTAGCCCCCAGTGCTGGCGAGACGAGAACC
AATACAGAACCGATGGTGCTGATCGTCGATGACTCGATCACGGTGCGTGAGCTGCTGTCGATGACCTTCAAAAAAGCGGG
CTATGTGGTGGAACAAGCGCGCAACGGCCAAGAAGCCCTAGAGAAGCTCTATTCGGGTCTGCCCTGCGATTTGGTTTTCT
GCGATATCGAAATGCCGAAGATGAATGGGCTAGAGCTCTTAGAGCGGCTTCAGGCTGATCCCAAGCTGCGGAGTTTACCG
GTGGCGATGCTGACATCGCGAGGCGCTGATCGCCATCGTCAAATTGCTGCCCACTTGGGCGCTCGGGCTTACTTCACAAA
ACCCTATCTAGAAGAGCAGCTGTTGGAGGCCTCGGCTCGCTTGAGAAATGGCGAACGACTCATTTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(806-917)

Hpt domain (Hpt)

(9-94)

Signal transducing histidine kinase, homodimeric domain (H-kinase_dim)

(293-367)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(496-634)

CheW-like domain (CheW)

(641-777)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q31PH5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL-C Synechocystis sp. PCC 6803

55.573

70.582

0.392