Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Regulator
Locus tag   D9C08_RS20280 Genome accession   NZ_CP032872
Coordinates   3783514..3784377 (-) Length   287 a.a.
NCBI ID   WP_014480705.1    Uniprot ID   Q9FAF1
Organism   Bacillus subtilis subsp. subtilis strain 2KL1     
Function   modification of ComX; production of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 3778514..3789377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C08_RS20245 (D9C08_20245) mrpE 3778682..3779158 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  D9C08_RS20250 (D9C08_20250) mrpF 3779158..3779442 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  D9C08_RS20255 (D9C08_20255) mnhG 3779426..3779800 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  D9C08_RS20260 (D9C08_20260) yuxO 3779839..3780219 (-) 381 WP_069837723.1 hotdog fold thioesterase -
  D9C08_RS20265 (D9C08_20265) comA 3780238..3780882 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  D9C08_RS20270 (D9C08_20270) comP 3780963..3783275 (-) 2313 WP_014480703.1 sensor histidine kinase Regulator
  D9C08_RS20275 (D9C08_20275) comX 3783291..3783512 (-) 222 WP_014480704.1 competence pheromone ComX -
  D9C08_RS20280 (D9C08_20280) comQ 3783514..3784377 (-) 864 WP_014480705.1 polyprenyl synthetase family protein Regulator
  D9C08_RS20285 (D9C08_20285) degQ 3784562..3784702 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  D9C08_RS20290 (D9C08_20290) - 3784924..3785049 (+) 126 WP_003228793.1 hypothetical protein -
  D9C08_RS20295 (D9C08_20295) - 3785164..3785532 (+) 369 WP_046381300.1 hypothetical protein -
  D9C08_RS20300 (D9C08_20300) pdeH 3785508..3786737 (-) 1230 WP_046381301.1 cyclic di-GMP phosphodiesterase -
  D9C08_RS20305 (D9C08_20305) pncB 3786873..3788345 (-) 1473 WP_003228788.1 nicotinate phosphoribosyltransferase -
  D9C08_RS20310 (D9C08_20310) pncA 3788361..3788912 (-) 552 WP_014480709.1 isochorismatase family cysteine hydrolase -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 32882.57 Da        Isoelectric Point: 5.2201

>NTDB_id=280298 D9C08_RS20280 WP_014480705.1 3783514..3784377(-) (comQ) [Bacillus subtilis subsp. subtilis strain 2KL1]
MKEIVDENILNEDLKVKLISFIKEKKQFSFAELAYYHYIAFDGKNDKAIELLASGIELLILSADIFDDIEDKDNLQASWM
KLDPSIATNAATALYTLSLQVIGSVSNHPKLLSLTLQYSLQSLQGQHVDLNLTASSESEYIEMIKLKSGSLVTLPSILGV
YLATGEYNETVEEYSRYLGIVEQIANDHYGLYYPNYNDFKTRHTLAFNYLKNKFNQSSIDLLNFYAQENHMINNLEDLKG
KLRESGVIQYLNVIKNLAVENFKESFKKLRLDEQRKNKLLIQLLRGI

Nucleotide


Download         Length: 864 bp        

>NTDB_id=280298 D9C08_RS20280 WP_014480705.1 3783514..3784377(-) (comQ) [Bacillus subtilis subsp. subtilis strain 2KL1]
ATGAAGGAGATTGTGGATGAAAATATTTTAAATGAGGACTTAAAAGTGAAGCTCATTTCTTTTATCAAAGAAAAAAAACA
ATTTTCATTTGCAGAACTGGCTTATTACCATTACATAGCATTTGATGGAAAAAACGACAAAGCAATTGAGTTATTGGCGT
CAGGTATAGAACTTTTAATTTTATCTGCGGACATTTTTGACGATATTGAGGATAAGGACAATCTTCAGGCTTCTTGGATG
AAATTAGATCCTTCTATAGCAACTAACGCAGCTACCGCACTTTATACATTAAGTCTGCAAGTAATAGGTTCAGTCTCAAA
TCATCCAAAACTTTTAAGCCTTACTTTGCAATATTCACTCCAATCTTTACAAGGACAACATGTAGATTTGAATTTAACAG
CCTCATCAGAATCAGAGTATATTGAAATGATTAAACTTAAGTCGGGTTCTCTGGTAACATTGCCCAGTATTCTTGGTGTA
TATCTGGCAACTGGAGAATATAATGAAACAGTTGAGGAGTATTCACGTTATTTAGGTATAGTCGAGCAAATTGCAAATGA
TCACTATGGACTTTATTACCCTAACTATAATGACTTCAAAACTAGACATACGCTTGCCTTCAATTATCTTAAAAATAAAT
TTAACCAATCATCAATTGACTTATTAAATTTTTATGCGCAAGAAAATCATATGATAAATAATTTGGAAGATTTGAAGGGA
AAGTTAAGAGAATCAGGTGTAATACAATATTTGAATGTTATAAAAAATTTAGCAGTGGAAAATTTTAAGGAATCATTCAA
AAAACTGAGATTAGATGAACAAAGAAAAAATAAATTACTTATTCAATTATTAAGGGGGATTTAA

Domains

Predicted by InterProScan.

Polyprenyl synthetase (polyprenyl_synt)

(45-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9FAF1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Bacillus subtilis subsp. subtilis str. 168

45

97.561

0.439