Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   D9C08_RS13150 Genome accession   NZ_CP032872
Coordinates   2507950..2508381 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis subsp. subtilis strain 2KL1     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 2502950..2513381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C08_RS13135 (D9C08_13135) kbl 2503512..2504690 (+) 1179 WP_014479819.1 glycine C-acetyltransferase -
  D9C08_RS13140 (D9C08_13140) - 2504821..2506173 (-) 1353 WP_014478984.1 IS1182 family transposase -
  D9C08_RS13145 (D9C08_13145) miaB 2506419..2507948 (+) 1530 WP_014664026.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  D9C08_RS13150 (D9C08_13150) ymcA 2507950..2508381 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  D9C08_RS13155 (D9C08_13155) cotE 2508643..2509188 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  D9C08_RS13160 (D9C08_13160) hexA 2509321..2511897 (+) 2577 WP_046160418.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=280250 D9C08_RS13150 WP_003231834.1 2507950..2508381(+) (ymcA) [Bacillus subtilis subsp. subtilis strain 2KL1]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=280250 D9C08_RS13150 WP_003231834.1 2507950..2508381(+) (ymcA) [Bacillus subtilis subsp. subtilis strain 2KL1]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AACAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAATCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1