Detailed information NTG0280078

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: C4K05_RS27185
• Genome accession: NZ_CP027752
• Coordinates: 6016352..6017680 (+)
• Length: 442 a.a.
• NCBI ID: WP_038635209.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. aureofaciens strain ChPhzTR38
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 6011352..6022680

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K05_RS27165 (C4K05_5519)	pgeF	6012851..6013576 (-)	726	WP_009050932.1	peptidoglycan editing factor PgeF	-
C4K05_RS27170 (C4K05_5520)	rluD	6013573..6014535 (-)	963	WP_009050933.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
C4K05_RS27175 (C4K05_5521)	-	6014688..6015710 (+)	1023	WP_007924720.1	outer membrane protein assembly factor BamD	-
C4K05_RS27180 (C4K05_5522)	-	6015845..6016078 (+)	234	WP_007924721.1	PP0621 family protein	-
C4K05_RS27185 (C4K05_5523)	pilR	6016352..6017680 (+)	1329	WP_038635209.1	sigma-54-dependent transcriptional regulator	Regulator
C4K05_RS27190 (C4K05_5524)	thiO	6017677..6018777 (-)	1101	WP_103330734.1	glycine oxidase ThiO	-
C4K05_RS27195 (C4K05_5525)	-	6018832..6019233 (-)	402	WP_041987304.1	type IV pilin protein	-
C4K05_RS27200 (C4K05_5526)	-	6019247..6022318 (-)	3072	WP_124302173.1	pilus assembly protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48809.14 Da
• Isoelectric Point: 8.7216

>NTDB_id=280078 C4K05_RS27185 WP_038635209.1 6016352..6017680(+) (pilR) [Pseudomonas chlororaphis subsp. aureofaciens strain ChPhzTR38]
MSPRQKVLIVDDDPGIREYLEISLGRMQRHTRSARTLGEARHWLAREGFDLCLSDLHLPDGTGLELLEHIQHHRLRMPLA
ILSTCARQETAVRVLKAGAIDFLSKPVALARLRELLNGPLPESTPANPATGPLLGNSTAMHKLRGQIHKLAQSQASVYIS
GESGSGKELAARAIHDQGPRASQGFVPINCGAIPPELMESEFFGHRKGSFSGAVEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDVRILCATHKTLQAEVHAGRFRQDLYYRLNVIELAVPPLRARKADIEPLATAILE
RLAQGNGQQLARLQPGALLALQGYDFPGNVRELENLLERAHTLCENRQIEARDLQLTPNGAHPAIAPGPAQVIDLEGYLQ
EVERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=280078 C4K05_RS27185 WP_038635209.1 6016352..6017680(+) (pilR) [Pseudomonas chlororaphis subsp. aureofaciens strain ChPhzTR38]
ATGAGCCCACGGCAAAAAGTCCTGATCGTCGATGACGATCCAGGCATTCGCGAATATCTGGAAATCAGCCTCGGCCGGAT
GCAGCGCCATACCCGTAGCGCCCGCACCCTGGGTGAAGCGCGTCACTGGCTGGCCCGGGAAGGTTTCGACCTGTGCCTGA
GCGACCTGCATCTGCCCGACGGCACGGGGCTGGAATTACTCGAGCATATCCAGCACCACCGGCTGCGAATGCCGCTGGCC
ATCCTCAGCACCTGCGCCCGCCAGGAAACCGCGGTCCGGGTCCTGAAGGCCGGCGCCATCGACTTCCTGAGCAAACCCGT
GGCCCTGGCCCGCCTGCGCGAGCTGCTGAACGGCCCCCTGCCCGAATCGACACCAGCGAACCCAGCTACCGGCCCACTGC
TCGGCAATTCGACCGCCATGCACAAACTGCGTGGACAGATCCACAAACTGGCCCAGAGTCAGGCCTCGGTCTATATCAGC
GGAGAGTCCGGCAGCGGCAAGGAACTGGCCGCCCGTGCGATTCACGACCAGGGACCACGGGCCAGCCAGGGCTTCGTGCC
GATCAACTGCGGGGCTATTCCGCCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGTGCCG
TCGAAGACAAACCCGGCCTGTTCCAGGCAGCGCACGGCGGCACCCTGTTTCTCGATGAGGTGGCCGATCTGCCACTGGCA
ATGCAGGTCAAATTGCTCCGTGCGCTCCAGGAGAAGGCGGTGCGCTGTGTCGGCGGACAGCAGGAGGTCCAGGTTGATGT
GCGCATTCTCTGCGCCACCCACAAGACGCTGCAGGCGGAAGTGCATGCCGGACGCTTTCGCCAGGATCTCTACTACCGCC
TCAACGTGATCGAACTGGCGGTGCCACCGCTACGGGCGCGCAAGGCTGATATCGAACCCTTGGCCACAGCCATCCTCGAG
CGCCTGGCACAGGGCAACGGCCAACAGTTGGCGCGACTCCAGCCAGGCGCGCTGCTGGCACTCCAGGGCTACGACTTTCC
CGGCAACGTGCGCGAGCTGGAGAACCTGCTCGAACGGGCGCACACCCTGTGCGAGAACCGGCAGATCGAAGCACGCGACC
TGCAACTGACACCAAACGGCGCACACCCGGCCATCGCGCCCGGCCCGGCACAGGTGATCGACCTTGAAGGTTATCTGCAG
GAAGTCGAGCGCCGGCTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGCTTGAGCCT
GTCGTTTCGTTCGATGCGCTACAGGCTGAAGAAACTCGGCCTGGATTAG

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (133-299)

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

• Response regulator receiver domain (Response_reg) (7-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	66.441	100	0.667
pilR	Acinetobacter baumannii strain A118	43.791	100	0.455