Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   D9C14_RS10565 Genome accession   NZ_CP032860
Coordinates   2030437..2030871 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis subsp. subtilis strain SSJ-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2025437..2035871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C14_RS10535 (D9C14_10535) ydaD 2026087..2026947 (+) 861 WP_033883707.1 SDR family oxidoreductase -
  D9C14_RS10540 (D9C14_10540) lyxE 2026963..2027466 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  D9C14_RS10545 (D9C14_10545) ydaF 2027552..2028103 (+) 552 WP_121572533.1 GNAT family protein -
  D9C14_RS10550 (D9C14_10550) ydaG 2028181..2028603 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  D9C14_RS10555 (D9C14_10555) amj 2029109..2029918 (+) 810 WP_003234394.1 lipid II flippase Amj -
  D9C14_RS10560 (D9C14_10560) ydzA 2029962..2030252 (-) 291 WP_003246602.1 DUF3817 domain-containing protein -
  D9C14_RS10565 (D9C14_10565) lrpC 2030437..2030871 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  D9C14_RS10570 (D9C14_10570) topB 2030936..2033119 (+) 2184 WP_038427393.1 DNA topoisomerase III -
  D9C14_RS10575 (D9C14_10575) ephJ 2033322..2034410 (+) 1089 WP_003246551.1 lipoprotein -
  D9C14_RS10580 (D9C14_10580) epsK 2034391..2035242 (+) 852 WP_121572534.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=279481 D9C14_RS10565 WP_003246585.1 2030437..2030871(+) (lrpC) [Bacillus subtilis subsp. subtilis strain SSJ-1]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=279481 D9C14_RS10565 WP_003246585.1 2030437..2030871(+) (lrpC) [Bacillus subtilis subsp. subtilis strain SSJ-1]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTATGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1