Detailed information NTG0278974

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: C4K38_RS27580
• Genome accession: NZ_CP027707
• Coordinates: 6084094..6085422 (+)
• Length: 442 a.a.
• NCBI ID: WP_053280980.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. piscium strain DSM 21509
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 6079094..6090422

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K38_RS27560 (C4K38_5579)	pgeF	6080593..6081318 (-)	726	WP_053280978.1	peptidoglycan editing factor PgeF	-
C4K38_RS27565 (C4K38_5580)	rluD	6081315..6082277 (-)	963	WP_053280979.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
C4K38_RS27570 (C4K38_5581)	-	6082430..6083452 (+)	1023	WP_009050934.1	outer membrane protein assembly factor BamD	-
C4K38_RS27575 (C4K38_5582)	-	6083587..6083820 (+)	234	WP_038575645.1	PP0621 family protein	-
C4K38_RS27580 (C4K38_5583)	pilR	6084094..6085422 (+)	1329	WP_053280980.1	sigma-54 dependent transcriptional regulator	Regulator
C4K38_RS27585 (C4K38_5584)	thiO	6085419..6086519 (-)	1101	WP_053280981.1	glycine oxidase ThiO	-
C4K38_RS27590 (C4K38_5585)	-	6086574..6086975 (-)	402	WP_025807536.1	type IV pilin protein	-
C4K38_RS27595 (C4K38_5586)	-	6086989..6090060 (-)	3072	WP_053280982.1	PilC/PilY family type IV pilus protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48894.33 Da
• Isoelectric Point: 9.1960

>NTDB_id=278974 C4K38_RS27580 WP_053280980.1 6084094..6085422(+) (pilR) [Pseudomonas chlororaphis subsp. piscium strain DSM 21509]
MSPRQKVLIVDNDPGIREYLEISLGRMQRHTRSARTLGEARRWLAREGFDLCLSDLHLPDGTGLELLEHIQHRRLRMPLA
ILSTCARQEAAAQALKAGAIDFLSKPVALARLRELLNSALLGSTPAPPATGPLLGDSAAMHKLRGQIDKLAQSQASVYIS
GESGSGKELVARAIHDQGSRASRAFVPINCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDARILCATHKALQAEVRAGRFRQDLYYRLNVIELPVPPLRARKDDIEPLAITILE
RLAQGDGQQLARLQPSALLALQGYDFPGNVRELENLLERAHTLCESRQIEARDLRLTPNGAHPAIAPDPAQVIDLEKHLQ
EVERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=278974 C4K38_RS27580 WP_053280980.1 6084094..6085422(+) (pilR) [Pseudomonas chlororaphis subsp. piscium strain DSM 21509]
ATGAGCCCACGGCAAAAAGTCCTGATCGTCGATAACGATCCAGGCATTCGCGAATATCTGGAAATCAGCCTCGGCCGGAT
GCAACGCCATACCCGCAGCGCCCGCACCTTGGGCGAAGCGCGTCGCTGGCTGGCCCGGGAGGGTTTCGACCTGTGCCTGA
GCGACCTGCATCTGCCCGACGGCACAGGGCTGGAATTACTCGAGCATATCCAGCACCGTCGGCTGCGAATGCCGCTGGCA
ATACTCAGCACCTGCGCCCGCCAGGAAGCCGCGGCCCAGGCCCTGAAGGCCGGTGCTATCGACTTTCTGAGCAAACCCGT
GGCCCTGGCCCGCTTGCGCGAACTGCTGAACAGCGCCCTGCTCGGATCGACGCCAGCGCCCCCTGCTACCGGCCCCTTGC
TCGGCGATTCGGCCGCCATGCACAAACTGCGCGGACAGATCGACAAACTGGCCCAGAGTCAGGCCTCGGTCTATATCAGC
GGTGAGTCCGGCAGCGGCAAGGAATTGGTCGCCCGTGCCATCCACGACCAGGGATCACGGGCCAGCCGCGCCTTCGTGCC
GATCAACTGCGGAGCTATTCCGCCGGAACTGATGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGTGCCA
TCGAAGACAAGCCCGGTTTGTTCCAGGCAGCGCACGGCGGCACCCTGTTTCTCGATGAGGTGGCCGATCTGCCGCTGGCG
ATGCAGGTCAAATTGCTCCGTGCGCTCCAGGAGAAGGCCGTGCGCTGTGTCGGTGGGCAGCAGGAGGTCCAGGTCGATGC
GCGCATTCTCTGCGCCACCCACAAGGCGCTGCAGGCGGAAGTGCGTGCCGGGCGTTTTCGTCAGGACCTCTACTACCGCC
TGAACGTGATCGAGCTGCCGGTGCCACCGCTACGGGCACGCAAGGACGATATCGAACCCTTGGCCATAACCATCCTCGAG
CGCCTGGCGCAGGGCGACGGCCAACAGCTGGCACGGCTTCAGCCAAGCGCACTGTTGGCGCTCCAGGGTTACGACTTTCC
CGGCAATGTGCGCGAACTGGAGAACCTGCTCGAACGGGCGCACACCCTGTGCGAGAGCCGGCAAATCGAAGCACGCGATC
TGCGCCTGACGCCAAACGGCGCCCACCCGGCCATCGCGCCCGACCCGGCACAGGTGATCGACCTTGAGAAACATCTGCAA
GAAGTCGAGCGCCGGCTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACCGCGGCGGCCCAGCGTTTGAGCCT
GTCGTTTCGTTCGATGCGCTACAGGCTGAAGAAACTCGGCCTGGATTAG

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

• Response regulator receiver domain (Response_reg) (7-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	66.817	100	0.67
pilR	Acinetobacter baumannii strain A118	43.791	100	0.455