Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C6W79_RS00105 Genome accession   NZ_CP027457
Coordinates   18037..18666 (-) Length   209 a.a.
NCBI ID   WP_001612760.1    Uniprot ID   A0A377CFT3
Organism   Escherichia coli strain 88-3493     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 13037..23666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6W79_RS00090 helD 13279..15333 (-) 2055 WP_001612761.1 DNA helicase IV -
  C6W79_RS00095 yccF 15456..15902 (+) 447 WP_001261235.1 YccF domain-containing protein -
  C6W79_RS00100 yccS 15912..18074 (+) 2163 WP_000323868.1 YccS family putative transporter -
  C6W79_RS00105 sxy/tfoX 18037..18666 (-) 630 WP_001612760.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C6W79_RS00110 sulA 18885..19394 (+) 510 WP_000288706.1 SOS-induced cell division inhibitor SulA -
  C6W79_RS00120 ompA 19751..20803 (+) 1053 WP_001307702.1 porin OmpA -
  C6W79_RS00125 matP 20880..21332 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  C6W79_RS00130 ycbZ 21518..23278 (+) 1761 WP_001612759.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24146.03 Da        Isoelectric Point: 9.4081

>NTDB_id=277352 C6W79_RS00105 WP_001612760.1 18037..18666(-) (sxy/tfoX) [Escherichia coli strain 88-3493]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSNGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=277352 C6W79_RS00105 WP_001612760.1 18037..18666(-) (sxy/tfoX) [Escherichia coli strain 88-3493]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTATTTGCGATGGTTTCTAATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A377CFT3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment