Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   CSB70_RS16815 Genome accession   NZ_CP027178
Coordinates   3411197..3412198 (-) Length   333 a.a.
NCBI ID   WP_000079200.1    Uniprot ID   A0A9P3CZV1
Organism   Acinetobacter baumannii strain AR_0070     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3406197..3417198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSB70_RS16805 (CSB70_3362) pilY1 3406516..3410370 (-) 3855 WP_000768966.1 PilC/PilY family type IV pilus protein Machinery gene
  CSB70_RS16810 (CSB70_3363) pilX 3410382..3411200 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  CSB70_RS16815 (CSB70_3364) pilW 3411197..3412198 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  CSB70_RS16820 (CSB70_3365) pilV 3412199..3412759 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  CSB70_RS16825 (CSB70_3366) fimU 3412753..3413226 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  CSB70_RS16830 (CSB70_3367) ispH 3413396..3414346 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  CSB70_RS16835 (CSB70_3368) gmk 3414469..3415098 (+) 630 WP_000015937.1 guanylate kinase -
  CSB70_RS16840 (CSB70_3369) rpoZ 3415171..3415449 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  CSB70_RS16845 - 3415488..3415618 (+) 131 Protein_3261 hypothetical protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35829.53 Da        Isoelectric Point: 5.7207

>NTDB_id=275535 CSB70_RS16815 WP_000079200.1 3411197..3412198(-) (pilW) [Acinetobacter baumannii strain AR_0070]
MAQSFISNKEQGFTLIELIVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYMARDIRLLNYGNVVNPQL
TDTTPWGGIVLTGSTATNANNINFIPKVDTNTYIPEALLSRGAGDTVSTVNNYWKGLSNIQNSSNAEVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVQRYFLRVDNNGSSQQDYALACDANTPAVSATAQPDIVNGLGDAGQIILPRIDHFHVLLGAKN
AAGNFAYYTIPQYRVAAQAARDASPAVAAPRILSIQISVLARSTNNAQNKAIDPNQSFLMLDQNVHAADNRTRFLRRVYS
VTIALRNAMGETI

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=275535 CSB70_RS16815 WP_000079200.1 3411197..3412198(-) (pilW) [Acinetobacter baumannii strain AR_0070]
ATGGCTCAATCATTTATTTCTAATAAAGAACAAGGTTTTACCTTGATTGAACTTATAGTCGCCTTAGCTTTAGGCCTAAT
ATTAGTGGCTGCTGCAACACAGCTATTTATTGGAGGGCTTTTATCGAGCCGATTGCAAAAGGCCAATGCTGAAATCCAGG
ATAGCGGTATTTTTGGTTTGGAATATATGGCACGTGATATACGGCTTCTAAATTATGGAAATGTTGTAAATCCACAATTA
ACAGATACAACGCCTTGGGGAGGTATTGTATTAACAGGTTCAACAGCAACAAATGCCAACAATATTAATTTTATTCCAAA
AGTTGATACAAATACTTATATTCCGGAAGCGTTATTAAGCCGTGGTGCAGGTGATACGGTAAGTACAGTGAATAACTACT
GGAAAGGTCTTTCAAATATACAGAATAGTTCAAATGCTGAAGTACAAAGCGATCAACTGACTATTCAATTCATTGCCCCG
ACCAATATGACTAATTGTGAAGGTGTGAATGTGTTAGCGGGGGACCTAATAGTTCAACGGTATTTTTTACGTGTTGATAA
TAATGGTAGCTCTCAACAGGATTATGCACTTGCATGTGATGCGAATACCCCTGCGGTTAGTGCTACAGCGCAACCTGATA
TCGTTAATGGATTAGGAGATGCAGGCCAAATTATACTGCCTCGTATTGACCATTTTCATGTCTTATTAGGTGCGAAAAAC
GCAGCTGGTAATTTTGCTTATTACACAATTCCTCAGTATCGGGTGGCTGCACAAGCTGCTCGAGATGCGAGTCCAGCTGT
GGCTGCTCCAAGAATTCTGTCAATACAAATATCGGTATTAGCCCGTTCTACAAATAATGCTCAAAATAAGGCAATAGACC
CTAATCAGTCTTTTCTTATGCTAGATCAGAATGTGCATGCTGCCGATAACAGAACTCGCTTTTTGCGACGCGTATATAGC
GTGACAATTGCTTTACGCAATGCAATGGGGGAAACAATATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

99.7

100

0.997

Multiple sequence alignment