Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C5B83_RS23445 Genome accession   NZ_CP026834
Coordinates   4492763..4493392 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Shigella dysenteriae strain ATCC 49347     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4487763..4498392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5B83_RS23425 - 4488164..4489924 (-) 1761 WP_000156488.1 Lon protease family protein -
  C5B83_RS23430 matP 4490110..4490562 (+) 453 WP_000877160.1 macrodomain Ter protein MatP -
  C5B83_RS23435 ompA 4490638..4491678 (-) 1041 WP_005042889.1 porin OmpA -
  C5B83_RS23440 sulA 4492035..4492544 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  C5B83_RS23445 sxy/tfoX 4492763..4493392 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C5B83_RS23450 yccS 4493355..4495517 (-) 2163 WP_000875021.1 YccS family putative transporter -
  C5B83_RS23455 - 4495527..4495973 (-) 447 WP_001261235.1 YccF domain-containing protein -
  C5B83_RS23460 helD 4496096..4498150 (+) 2055 WP_005043009.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=272897 C5B83_RS23445 WP_000839153.1 4492763..4493392(+) (sxy/tfoX) [Shigella dysenteriae strain ATCC 49347]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=272897 C5B83_RS23445 WP_000839153.1 4492763..4493392(+) (sxy/tfoX) [Shigella dysenteriae strain ATCC 49347]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCACTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment