Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   D1101_RS04180 Genome accession   NZ_CP031866
Coordinates   890946..893240 (-) Length   764 a.a.
NCBI ID   WP_039709649.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae serovar 8 str. 405     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 885946..898240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1101_RS04155 (D1101_04185) - 886534..886776 (-) 243 WP_039709093.1 alternative ribosome-rescue factor A -
  D1101_RS04160 (D1101_04190) - 886944..887699 (+) 756 WP_005597193.1 class I SAM-dependent methyltransferase -
  D1101_RS04165 (D1101_04195) - 887758..888819 (+) 1062 WP_005604294.1 AI-2E family transporter -
  D1101_RS04170 (D1101_04200) - 888849..889778 (+) 930 WP_218633980.1 gluconeogenesis factor YvcK family protein -
  D1101_RS04175 (D1101_04205) queA 889826..890911 (+) 1086 WP_005612037.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  D1101_RS04180 (D1101_04210) rec2 890946..893240 (-) 2295 WP_039709649.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  D1101_RS04185 (D1101_04215) sstT 893340..894554 (-) 1215 WP_005597199.1 serine/threonine transporter SstT -
  D1101_RS04190 (D1101_04220) - 894803..895165 (+) 363 WP_005597201.1 diacylglycerol kinase -
  D1101_RS04195 (D1101_04225) ushA 895246..896889 (+) 1644 WP_005607695.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA -
  D1101_RS04200 (D1101_04230) - 896968..897321 (+) 354 WP_052245666.1 DUF4298 domain-containing protein -
  D1101_RS04205 (D1101_04235) - 897394..897759 (+) 366 WP_117374119.1 hypothetical protein -

Sequence

Protein


Download         Length: 764 a.a.        Molecular weight: 88781.81 Da        Isoelectric Point: 9.6396

>NTDB_id=272282 D1101_RS04180 WP_039709649.1 890946..893240(-) (rec2) [Actinobacillus pleuropneumoniae serovar 8 str. 405]
MNLDRFSILICLTFLPLLWLPYQWFAFVILLFLIVVLYGLYTRCLMLLVFALVMGGSYYSVWQFAKKAENQTAGKYYEKI
EITRLVKQSTYQTAIAKRENNEQIYLHWQSDVPLVLGATYQAELQFRPISARANIGNFDRQRWYFAQHLQGSTTVREAKR
IEREQSTLRQAFLTKVRRQTETLAAQGLLLALAFGERAWINEHHWQIFQKTSTAHLIAISGLHIGLAFLCGFWCAKVLQW
CLLRCKSWQAVGFYYFFAHIIGIIFAIGYSYFAGFSIPTIRALTAICFVLLCRFLRYHYTPWQYWWRVVTVLLLFDPITV
LSDSFWLSILAVMSLLIWYQYFPLSAFLRKFAYRKWGKIVRFCLGLIHLQCGILLIFTPVQFFFFEGISLTALPANLVIV
PLYSFVLVPLVLIGLLTDNGFNTWQLANRLIGYSLDYLETISQQWIWLSHRQQAQWLIIDLAILFILYGILHARTALYWY
KRYALLLCCQCVFYLFQLDKVPLQWITFDVGQGLAQAFIYYDTSGQKKAIFYDTGIGWGKHDNGGSMASIEILPYLRRHQ
IEVEAIFLSHDDNDHSGGAADLLNAYPNARLISSSLKPYANVQPEACIQGKRWRFGRLEFEAVYPKERVERAKNADSCII
LAKFDRFQILLTGDTGIEQERKIAELLNGIDFLQVAHHGSKTSSSHTLLAKSKPQLAVVSVGRWNPWRMPHPKVVERFEQ
HKIPLVTTAKQGMIIVNFDSDKWQLKTARNDFSPWYRRLYGKNR

Nucleotide


Download         Length: 2295 bp        

>NTDB_id=272282 D1101_RS04180 WP_039709649.1 890946..893240(-) (rec2) [Actinobacillus pleuropneumoniae serovar 8 str. 405]
ATGAATCTTGACCGCTTTTCTATTCTTATTTGTCTCACTTTTTTACCTCTTCTTTGGCTGCCGTATCAATGGTTTGCTTT
TGTTATTCTTCTTTTTCTAATTGTTGTGCTATACGGTTTATATACGCGTTGTTTAATGCTGCTGGTATTTGCGTTAGTAA
TGGGTGGAAGTTATTACTCCGTATGGCAGTTTGCAAAAAAGGCCGAAAATCAGACCGCCGGTAAATACTACGAAAAAATT
GAAATAACTCGTTTGGTTAAACAATCGACTTATCAAACGGCAATTGCTAAAAGGGAGAATAATGAACAGATTTATCTGCA
TTGGCAAAGTGACGTTCCTTTGGTTTTAGGCGCAACTTATCAGGCGGAACTGCAGTTTCGTCCGATTTCTGCACGTGCGA
ATATAGGTAATTTTGATCGGCAACGTTGGTATTTCGCCCAACATTTACAGGGAAGTACGACTGTACGAGAAGCAAAGCGA
ATTGAGCGGGAGCAAAGCACATTACGTCAAGCGTTCTTAACTAAGGTTCGACGACAGACCGAAACATTAGCCGCTCAAGG
ACTATTACTTGCTTTGGCATTCGGTGAACGAGCGTGGATTAATGAGCATCATTGGCAAATTTTCCAAAAGACTTCAACCG
CACATTTAATTGCGATTTCCGGCTTACATATCGGTTTGGCGTTTTTATGCGGATTTTGGTGCGCTAAGGTGTTGCAATGG
TGTTTATTACGTTGTAAGAGCTGGCAAGCGGTTGGATTTTACTACTTTTTTGCTCATATTATCGGAATCATTTTTGCGAT
AGGTTATAGTTATTTTGCCGGATTCTCCATACCGACCATACGTGCATTGACGGCGATTTGCTTCGTATTATTATGTCGAT
TCCTGCGCTATCACTATACGCCGTGGCAATATTGGTGGCGGGTTGTCACGGTATTGTTATTATTTGATCCGATTACCGTG
TTATCAGACAGTTTTTGGCTTTCTATTTTAGCCGTGATGAGTTTACTGATTTGGTATCAATATTTCCCGTTATCCGCTTT
TTTAAGAAAGTTTGCCTATCGTAAATGGGGAAAAATCGTTCGATTTTGTCTCGGACTCATCCATTTACAATGCGGTATTT
TGCTTATTTTTACCCCGGTACAATTTTTCTTTTTTGAGGGCATATCGCTTACGGCACTACCGGCAAATTTAGTGATCGTA
CCTTTATATAGTTTCGTATTAGTACCCTTGGTTTTAATCGGCTTATTAACCGATAACGGCTTTAATACTTGGCAATTAGC
GAATAGATTAATCGGCTATAGTTTAGATTATTTAGAAACGATTTCTCAACAGTGGATTTGGTTGAGTCATCGACAACAGG
CGCAATGGCTGATTATTGACTTAGCGATATTGTTTATTTTATATGGCATATTACATGCGCGAACCGCATTATACTGGTAT
AAAAGATATGCTTTATTATTGTGTTGTCAATGCGTTTTCTATTTATTTCAATTAGATAAAGTACCGTTACAGTGGATCAC
TTTTGATGTCGGGCAAGGGTTGGCTCAGGCGTTTATTTATTATGATACAAGCGGTCAAAAAAAGGCGATTTTTTACGATA
CTGGGATTGGATGGGGAAAGCATGATAACGGCGGATCTATGGCTTCGATTGAAATACTACCTTATTTACGCCGCCATCAA
ATTGAAGTCGAAGCCATATTTTTAAGCCATGACGATAATGATCATTCCGGCGGAGCGGCGGATTTACTTAACGCTTATCC
GAATGCAAGACTTATTTCAAGTAGCCTTAAACCTTATGCAAACGTTCAACCTGAGGCTTGTATTCAAGGAAAAAGATGGC
GATTCGGCAGATTAGAATTTGAAGCCGTTTATCCTAAAGAGCGTGTAGAAAGAGCGAAAAATGCCGATTCTTGCATCATT
TTGGCAAAATTCGACCGCTTTCAAATATTATTAACCGGCGATACCGGCATTGAGCAAGAACGAAAAATCGCAGAACTATT
AAATGGTATTGATTTTTTGCAGGTGGCTCATCACGGCAGTAAAACCAGTAGTAGTCATACGCTATTGGCAAAAAGCAAAC
CTCAGTTAGCGGTAGTTTCCGTCGGGCGGTGGAACCCGTGGAGAATGCCTCATCCAAAAGTGGTTGAAAGATTTGAACAG
CATAAGATTCCGTTAGTGACTACGGCAAAGCAGGGAATGATCATTGTTAATTTTGATTCGGATAAATGGCAATTAAAGAC
GGCTCGAAACGATTTTTCACCTTGGTATCGGCGTTTATACGGAAAAAATAGATAA

Domains

Predicted by InterProScan.

Competence protein (Competence)

(192-468)

Metallo-beta-lactamase superfamily (Lactamase_B)

(525-702)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

40.621

100

0.411