Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   C3438_RS14130 Genome accession   NZ_CP026533
Coordinates   2722943..2723734 (+) Length   263 a.a.
NCBI ID   WP_022552784.1    Uniprot ID   -
Organism   Bacillus velezensis strain DKU_NT_04     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 2717943..2728734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3438_RS14105 (C3438_14105) - 2719937..2720821 (+) 885 WP_104843192.1 PhzF family phenazine biosynthesis isomerase -
  C3438_RS14110 (C3438_14110) - 2720898..2721482 (+) 585 WP_017419145.1 nitroreductase -
  C3438_RS14115 (C3438_14115) - 2721522..2721713 (-) 192 WP_003155508.1 YfhD family protein -
  C3438_RS14120 (C3438_14120) - 2721784..2721894 (-) 111 WP_003155504.1 YfhE family protein -
  C3438_RS14125 (C3438_14125) - 2721952..2722851 (-) 900 WP_104843193.1 TIGR01777 family oxidoreductase -
  C3438_RS14130 (C3438_14130) recX 2722943..2723734 (+) 792 WP_022552784.1 recombination regulator RecX Regulator
  C3438_RS14135 (C3438_14135) - 2723741..2724055 (+) 315 WP_063636897.1 YfhH family protein -
  C3438_RS14140 (C3438_14140) - 2724200..2725393 (+) 1194 WP_026092305.1 MFS transporter -
  C3438_RS14145 (C3438_14145) - 2725433..2725822 (-) 390 WP_014417236.1 DUF2606 family protein -
  C3438_RS14150 (C3438_14150) - 2725785..2726696 (-) 912 WP_104843194.1 serine protease -
  C3438_RS14155 (C3438_14155) - 2726841..2726993 (-) 153 WP_003155495.1 small, acid-soluble spore protein K -
  C3438_RS14160 (C3438_14160) - 2727117..2727386 (+) 270 WP_003155492.1 YfhJ family protein -
  C3438_RS14165 (C3438_14165) - 2727518..2728045 (+) 528 WP_104843195.1 SH3 domain-containing protein -
  C3438_RS14170 (C3438_14170) - 2728131..2728466 (+) 336 WP_017419152.1 SdpI family protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30964.15 Da        Isoelectric Point: 6.2729

>NTDB_id=270167 C3438_RS14130 WP_022552784.1 2722943..2723734(+) (recX) [Bacillus velezensis strain DKU_NT_04]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRFDLKKGKELDELDILEIQHGDDVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPDMVISEVIHKLYDYRYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDDQIQE
ALKHIGKILKKDKKLSTKEIRQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKAHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=270167 C3438_RS14130 WP_022552784.1 2722943..2723734(+) (recX) [Bacillus velezensis strain DKU_NT_04]
ATGCCGTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAGCGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTGCTTGTGCGTTTTGACCTGAAGAAAGGGAAAGAACTGGACGAGCTTGACATTCTTGAAATCC
AGCACGGCGATGACGTGAAAAAAGCCTTTAACCGCGCCGTAGAATTTTTATCATACCGGATGCGCTCTGAAAAAGAAGTC
CGGGATCATCTGAAGAAAAAAGAAACACCGGACATGGTCATTTCTGAAGTCATCCATAAACTGTACGATTACCGCTACTT
AAATGACAAAGAATTTGCCGAAGCTTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGCCCTGACGTCCTGTTCCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATCAAGGAGACGCTCAGTGCGTTTACATTTGATGATCAAATACAAGAA
GCGCTGAAACATATCGGCAAAATCCTCAAAAAAGACAAAAAGCTGTCCACAAAAGAGATCAGACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTCCCTTTCGACGTCATCAATGCCGCTCTGGAACAGACGGAGTATGAAAATGATGATGAAGCCG
AGATGGAAGCTCTGAAGGCTCATGCGGAAAAAGCGATCAGGAAATACCGCTATGACGGCAGTTATGAAAGCGGAATGAAG
GTCAAACAGTACTTATTCAGAAAAGGATTCTCGATTGACGATATTGATCAATTCTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

79.468

100

0.795

Multiple sequence alignment