Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   C3F22_RS13260 Genome accession   NZ_CP026420
Coordinates   2720057..2720383 (-) Length   108 a.a.
NCBI ID   WP_104426706.1    Uniprot ID   -
Organism   Acinetobacter sp. ACNIH1     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2715057..2725383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3F22_RS13240 (C3F22_13250) - 2715254..2715913 (-) 660 WP_104426702.1 FHA domain-containing protein -
  C3F22_RS13245 (C3F22_13255) gspD 2715976..2718231 (-) 2256 WP_104426703.1 type II secretion system secretin GspD -
  C3F22_RS13250 (C3F22_13260) - 2718270..2719127 (-) 858 WP_104426704.1 type II secretion system protein N -
  C3F22_RS13255 (C3F22_13265) gspN 2719127..2719870 (-) 744 WP_104426705.1 type II secretion system protein N -
  C3F22_RS13260 (C3F22_13270) hns 2720057..2720383 (-) 327 WP_104426706.1 H-NS family nucleoid-associated regulatory protein Regulator
  C3F22_RS13265 (C3F22_13275) - 2720537..2720962 (-) 426 WP_104427025.1 acyl-CoA thioesterase -
  C3F22_RS13270 (C3F22_13280) - 2720970..2722163 (-) 1194 WP_104426707.1 hypothetical protein -
  C3F22_RS13275 (C3F22_13285) - 2722170..2723009 (-) 840 WP_104426708.1 hypothetical protein -
  C3F22_RS13280 (C3F22_13290) - 2723017..2723784 (-) 768 WP_104426709.1 uroporphyrinogen-III synthase -
  C3F22_RS13285 (C3F22_13295) hemC 2723784..2724707 (-) 924 WP_034171569.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12382.18 Da        Isoelectric Point: 5.9546

>NTDB_id=269239 C3F22_RS13260 WP_104426706.1 2720057..2720383(-) (hns) [Acinetobacter sp. ACNIH1]
MMPDITNLSVEELKRLQAEAESLIALKKDQEIEDAYHQVLEIADKVGLTIEQLLEFGASKRKKTARKSVEPRYRSKSNPE
DTWTGRGKQPRWLVAELEKGAKLEDFVI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=269239 C3F22_RS13260 WP_104426706.1 2720057..2720383(-) (hns) [Acinetobacter sp. ACNIH1]
ATGATGCCAGACATTACAAATTTATCAGTTGAAGAGTTAAAACGTTTACAAGCAGAAGCTGAGTCTTTAATTGCTTTGAA
AAAAGATCAGGAAATTGAAGATGCTTATCATCAGGTATTGGAAATTGCCGATAAGGTAGGCTTAACGATTGAACAGCTTC
TTGAATTTGGTGCTTCTAAACGTAAAAAAACTGCACGTAAGTCTGTAGAGCCACGTTATCGCAGTAAAAGCAATCCGGAA
GACACCTGGACTGGTCGCGGTAAACAGCCACGCTGGTTAGTTGCTGAATTAGAGAAGGGCGCAAAACTGGAAGATTTTGT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

78.704

100

0.787

Multiple sequence alignment