Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C3E99_RS13585 Genome accession   NZ_CP026381
Coordinates   2959576..2960937 (-) Length   453 a.a.
NCBI ID   WP_104960384.1    Uniprot ID   A0A2L0VVR4
Organism   Sphingopyxis sp. MG     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2954576..2965937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3E99_RS13560 (C3E99_13555) - 2954723..2955286 (+) 564 WP_067187173.1 shikimate kinase -
  C3E99_RS13565 (C3E99_13560) aroB 2955274..2956380 (+) 1107 WP_104959955.1 3-dehydroquinate synthase -
  C3E99_RS13570 (C3E99_13565) - 2956409..2958295 (-) 1887 WP_076076899.1 cation:proton antiporter -
  C3E99_RS13575 (C3E99_13570) - 2958292..2958717 (-) 426 WP_104959956.1 iron-sulfur cluster assembly scaffold protein -
  C3E99_RS13580 (C3E99_13575) - 2958714..2959289 (-) 576 WP_076078127.1 CvpA family protein -
  C3E99_RS13585 (C3E99_13580) radA 2959576..2960937 (-) 1362 WP_104960384.1 DNA repair protein RadA Machinery gene
  C3E99_RS13590 (C3E99_13585) fsa 2961126..2961776 (+) 651 WP_076076901.1 fructose-6-phosphate aldolase -
  C3E99_RS13595 (C3E99_13590) - 2961960..2962763 (+) 804 WP_076076904.1 enoyl-CoA hydratase-related protein -
  C3E99_RS13600 (C3E99_13595) - 2962771..2964264 (+) 1494 WP_104960385.1 acetyl-CoA acetyltransferase -
  C3E99_RS13605 (C3E99_13600) - 2964372..2965901 (-) 1530 WP_104959957.1 aldehyde dehydrogenase family protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 47413.26 Da        Isoelectric Point: 6.2631

>NTDB_id=269018 C3E99_RS13585 WP_104960384.1 2959576..2960937(-) (radA) [Sphingopyxis sp. MG]
MAKAKRQYVCQNCGAVSYRWQGQCADCGEWNTLVEEAAETVFSAKHDLSKGGRTLALETLDEQSAMPERMLCGIAEFDRA
LGGGFVAGSATLIGGDPGIGKSTLLLQAAGRIAKAGRSVVYISGEEAAAQVRLRAQRLGLGDAPVALASATSVRDILATL
EGRGADFVVIDSIQTMHSDLIDSAPGTVSQVRASAQELIRYAKDSGAAIVLVGHVTKDGTIAGPRVLEHMVDTVLAFEGE
RSHQYRILRAVKNRFGGTDEIGVFAMGEEGLGEVANPSSLFLTDRSRDVPGSVVFPALEGTRPVLVEVQALTVRLASGAT
PRRAVVGWDSGRLAMVLAVLEARCGLQMGAAEVYLNIAGGYRLTDPAADLAVAAALISAFSERPVPADAIVFGELSLSGE
VRPVAHDALRLREAAKLGFSSGWGPKGMKGVKGIGVTGFGRLGELVDLMLGRA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=269018 C3E99_RS13585 WP_104960384.1 2959576..2960937(-) (radA) [Sphingopyxis sp. MG]
ATGGCCAAAGCGAAACGCCAATATGTCTGCCAGAATTGCGGCGCCGTCAGCTATCGCTGGCAGGGTCAGTGCGCCGATTG
CGGCGAATGGAACACGCTGGTCGAGGAAGCGGCCGAAACGGTCTTTTCCGCGAAGCACGACCTGTCGAAGGGCGGCCGCA
CGCTCGCGCTCGAAACGCTCGACGAACAGAGCGCAATGCCCGAGCGGATGCTGTGCGGCATCGCCGAGTTCGACCGCGCG
CTCGGCGGCGGCTTCGTCGCCGGGTCGGCGACGCTGATCGGCGGCGATCCCGGGATCGGCAAATCGACCTTGCTGCTTCA
GGCCGCGGGCCGGATCGCCAAGGCGGGCAGGTCGGTCGTCTATATCAGCGGCGAGGAAGCGGCGGCGCAGGTGCGGCTGC
GCGCGCAGCGGCTGGGGCTCGGCGACGCGCCGGTGGCGCTCGCCAGCGCGACTTCGGTGCGCGACATCCTCGCAACGCTG
GAGGGGCGCGGCGCCGATTTCGTCGTCATCGATTCGATCCAGACGATGCACAGCGACCTGATCGACAGCGCGCCGGGCAC
CGTCAGCCAGGTGCGCGCGAGCGCGCAGGAGTTGATCCGCTATGCCAAGGACAGCGGCGCGGCGATCGTGCTCGTCGGCC
ATGTGACGAAGGACGGGACGATCGCGGGACCGCGCGTGCTTGAGCATATGGTCGACACCGTGCTGGCGTTCGAGGGCGAG
CGCAGCCACCAGTATCGCATCCTGCGCGCGGTCAAGAACCGCTTTGGCGGCACCGACGAGATCGGGGTGTTCGCGATGGG
CGAGGAGGGGCTGGGCGAGGTCGCCAACCCGTCGAGCCTCTTCCTGACCGACCGCAGCCGCGACGTGCCGGGGTCGGTGG
TGTTCCCCGCGCTGGAGGGCACGCGGCCGGTGCTGGTCGAGGTACAGGCGCTGACCGTCCGCCTCGCCAGCGGCGCGACG
CCGCGCCGCGCCGTCGTCGGCTGGGACAGCGGGCGGCTCGCGATGGTGCTCGCGGTGCTCGAGGCGCGCTGCGGGCTCCA
GATGGGTGCGGCGGAGGTCTATCTGAACATCGCGGGCGGCTATCGCCTCACCGATCCGGCGGCCGACCTCGCCGTGGCGG
CGGCGCTGATCTCGGCGTTCAGCGAGCGGCCGGTGCCCGCCGATGCGATCGTCTTCGGCGAACTTTCGCTGTCGGGCGAG
GTGCGCCCGGTCGCGCACGACGCGCTGCGCCTGCGCGAGGCGGCGAAGCTCGGCTTTTCAAGCGGCTGGGGGCCAAAGGG
GATGAAGGGTGTGAAGGGGATCGGCGTCACCGGCTTCGGCCGGCTCGGCGAACTCGTTGACCTGATGCTCGGGCGTGCCT
AG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(81-219)

Subunit ChlI of Mg-chelatase (ChlI)

(342-419)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2L0VVR4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

47.629

100

0.488
  radA Streptococcus pneumoniae Rx1

47.072

98.013

0.461
  radA Streptococcus pneumoniae D39

47.072

98.013

0.461
  radA Streptococcus pneumoniae R6

47.072

98.013

0.461
  radA Streptococcus pneumoniae TIGR4

47.072

98.013

0.461
  radA Streptococcus mitis NCTC 12261

46.444

99.338

0.461
  radA Streptococcus mitis SK321

47.775

94.26

0.45

Multiple sequence alignment