Detailed information
Bioinformatically predicted
Overview
| Name | pilA/pilAI | Type | Machinery gene |
| Locus tag | C2859_RS18090 | Genome accession | NZ_CP026334 |
| Coordinates | 3962784..3963191 (-) | Length | 135 a.a. |
| NCBI ID | WP_016849608.1 | Uniprot ID | - |
| Organism | Xanthomonas citri pv. glycines strain EB08 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3957784..3968191
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C2859_RS18065 (C2859_17965) | pilR | 3958612..3960066 (+) | 1455 | WP_016850709.1 | sigma-54 dependent transcriptional regulator | Regulator |
| C2859_RS18085 (C2859_17985) | pilB | 3960913..3962649 (-) | 1737 | WP_029828360.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| C2859_RS18090 (C2859_17990) | pilA/pilAI | 3962784..3963191 (-) | 408 | WP_016849608.1 | pilin | Machinery gene |
| C2859_RS18095 (C2859_17995) | pilC | 3963550..3964803 (+) | 1254 | WP_026006934.1 | type II secretion system F family protein | Machinery gene |
| C2859_RS18100 (C2859_18000) | - | 3964810..3965673 (+) | 864 | WP_016849610.1 | A24 family peptidase | - |
| C2859_RS18105 (C2859_18005) | coaE | 3965687..3966298 (+) | 612 | WP_016849611.1 | dephospho-CoA kinase | - |
| C2859_RS24520 | - | 3966693..3966959 (+) | 267 | WP_154666337.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 135 a.a. Molecular weight: 13974.02 Da Isoelectric Point: 8.4717
>NTDB_id=268293 C2859_RS18090 WP_016849608.1 3962784..3963191(-) (pilA/pilAI) [Xanthomonas citri pv. glycines strain EB08]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYVVKSQAASALAEITPGKVGFEQATNEGKTPSTAAADAGYIGVGGTTS
YCTVTVTATTIVCATRGGNATKFNGKNLTWTRDAATGLWSCSSDLDAKYKPGKCT
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYVVKSQAASALAEITPGKVGFEQATNEGKTPSTAAADAGYIGVGGTTS
YCTVTVTATTIVCATRGGNATKFNGKNLTWTRDAATGLWSCSSDLDAKYKPGKCT
Nucleotide
Download Length: 408 bp
>NTDB_id=268293 C2859_RS18090 WP_016849608.1 3962784..3963191(-) (pilA/pilAI) [Xanthomonas citri pv. glycines strain EB08]
ATGAAAAAGCAGCAAGGTTTTACGCTGATCGAACTGATGATCGTTGTTGCGATCATCGCCATTCTGGCCGCCATCGCGCT
GCCGGCCTATCAGGACTATGTGGTGAAGTCGCAGGCCGCATCTGCCCTTGCTGAAATCACTCCCGGAAAGGTTGGCTTCG
AGCAGGCAACCAACGAAGGTAAGACCCCTAGCACCGCCGCTGCTGACGCAGGCTACATCGGCGTGGGTGGTACTACCTCG
TATTGCACCGTGACGGTCACTGCCACCACCATCGTTTGCGCCACCCGTGGTGGAAACGCGACGAAGTTCAATGGCAAGAA
CTTGACCTGGACCCGCGACGCCGCGACTGGTCTGTGGAGCTGCTCGTCTGATCTGGACGCGAAGTACAAGCCGGGTAAGT
GCACCTAA
ATGAAAAAGCAGCAAGGTTTTACGCTGATCGAACTGATGATCGTTGTTGCGATCATCGCCATTCTGGCCGCCATCGCGCT
GCCGGCCTATCAGGACTATGTGGTGAAGTCGCAGGCCGCATCTGCCCTTGCTGAAATCACTCCCGGAAAGGTTGGCTTCG
AGCAGGCAACCAACGAAGGTAAGACCCCTAGCACCGCCGCTGCTGACGCAGGCTACATCGGCGTGGGTGGTACTACCTCG
TATTGCACCGTGACGGTCACTGCCACCACCATCGTTTGCGCCACCCGTGGTGGAAACGCGACGAAGTTCAATGGCAAGAA
CTTGACCTGGACCCGCGACGCCGCGACTGGTCTGTGGAGCTGCTCGTCTGATCTGGACGCGAAGTACAAGCCGGGTAAGT
GCACCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
68.148 |
100 |
0.681 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
62.406 |
98.519 |
0.615 |
| pilA | Pseudomonas aeruginosa PAK |
44.667 |
100 |
0.496 |
| pilA | Acinetobacter baumannii strain A118 |
44.056 |
100 |
0.467 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
44.697 |
97.778 |
0.437 |
| comP | Acinetobacter baylyi ADP1 |
40.136 |
100 |
0.437 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
35.443 |
100 |
0.415 |
| pilA | Vibrio cholerae strain A1552 |
38.732 |
100 |
0.407 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
38.732 |
100 |
0.407 |
| pilA | Vibrio cholerae C6706 |
38.732 |
100 |
0.407 |
| pilA2 | Legionella pneumophila str. Paris |
37.956 |
100 |
0.385 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
37.956 |
100 |
0.385 |