Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   RK78_RS05640 Genome accession   NZ_CP026066
Coordinates   1123901..1124470 (+) Length   189 a.a.
NCBI ID   WP_000872867.1    Uniprot ID   -
Organism   Staphylococcus aureus strain FDAARGOS_20     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1118901..1129470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RK78_RS05615 (RK78_005615) cysE 1120114..1120761 (+) 648 WP_017466658.1 serine O-acetyltransferase -
  RK78_RS05620 (RK78_005620) cysS 1120745..1122145 (+) 1401 WP_031883277.1 cysteine--tRNA ligase -
  RK78_RS05625 (RK78_005625) - 1122138..1122542 (+) 405 WP_000370181.1 Mini-ribonuclease 3 -
  RK78_RS05630 (RK78_005630) rlmB 1122550..1123296 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  RK78_RS05635 (RK78_005635) - 1123296..1123820 (+) 525 WP_000664740.1 NYN domain-containing protein -
  RK78_RS05640 (RK78_005640) sigH 1123901..1124470 (+) 570 WP_000872867.1 RNA polymerase sigma factor Regulator
  RK78_RS05645 (RK78_005645) rpmG 1124585..1124728 (+) 144 WP_001791441.1 50S ribosomal protein L33 -
  RK78_RS05650 (RK78_005650) secE 1124784..1124966 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  RK78_RS05655 (RK78_005655) nusG 1124979..1125527 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  RK78_RS05660 (RK78_005660) rplK 1125708..1126130 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  RK78_RS05665 (RK78_005665) rplA 1126338..1127030 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  RK78_RS05675 (RK78_005675) rplJ 1127302..1127802 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  RK78_RS05680 (RK78_005680) rplL 1127845..1128213 (+) 369 WP_001273587.1 50S ribosomal protein L7/L12 -
  RK78_RS05685 (RK78_005685) - 1128388..1128996 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23111.98 Da        Isoelectric Point: 9.6015

>NTDB_id=266340 RK78_RS05640 WP_000872867.1 1123901..1124470(+) (sigH) [Staphylococcus aureus strain FDAARGOS_20]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSAEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=266340 RK78_RS05640 WP_000872867.1 1123901..1124470(+) (sigH) [Staphylococcus aureus strain FDAARGOS_20]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATACGGCGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGATTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGCAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979

Multiple sequence alignment