Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   C2I05_RS01985 Genome accession   NZ_CP026039
Coordinates   344014..344817 (-) Length   267 a.a.
NCBI ID   WP_032726121.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK1_2     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 339014..349817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2I05_RS01960 (C2I05_01930) glpQ 340152..340883 (-) 732 WP_049141221.1 glycerophosphodiester phosphodiesterase -
  C2I05_RS01965 (C2I05_01935) yqiI 340962..341582 (-) 621 WP_120028356.1 N-acetylmuramoyl-L-alanine amidase -
  C2I05_RS01970 (C2I05_01940) - 341602..341898 (-) 297 WP_120028603.1 hypothetical protein -
  C2I05_RS01975 - 342206..342358 (+) 153 WP_014480226.1 hypothetical protein -
  C2I05_RS01980 (C2I05_01945) yqiG 342431..343549 (+) 1119 WP_032726120.1 NADH-dependent flavin oxidoreductase -
  C2I05_RS01985 (C2I05_01950) spo0A 344014..344817 (-) 804 WP_032726121.1 sporulation transcription factor Spo0A Regulator
  C2I05_RS01990 (C2I05_01960) spoIVB 345092..346372 (-) 1281 WP_032726122.1 SpoIVB peptidase -
  C2I05_RS01995 (C2I05_01965) recN 346547..348277 (-) 1731 WP_120028357.1 DNA repair protein RecN Machinery gene
  C2I05_RS02000 (C2I05_01970) argR 348314..348763 (-) 450 WP_015384067.1 arginine repressor ArgR -
  C2I05_RS02005 (C2I05_01975) yqxC 348861..349706 (-) 846 WP_120028358.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29677.16 Da        Isoelectric Point: 6.3909

>NTDB_id=265818 C2I05_RS01985 WP_032726121.1 344014..344817(-) (spo0A) [Bacillus subtilis strain PK1_2]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=265818 C2I05_RS01985 WP_032726121.1 344014..344817(-) (spo0A) [Bacillus subtilis strain PK1_2]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
TGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

99.625

100

0.996

Multiple sequence alignment