Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   DV155_RS01560 Genome accession   NZ_CP031326
Coordinates   280170..280763 (-) Length   197 a.a.
NCBI ID   WP_115431786.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M21374     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 275170..285763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV155_RS01525 dapC 275658..276845 (-) 1188 WP_002220680.1 succinyldiaminopimelate transaminase -
  DV155_RS01530 dut 276921..277373 (-) 453 WP_002220679.1 dUTP diphosphatase -
  DV155_RS01535 - 277516..277941 (+) 426 Protein_260 AzlC family ABC transporter permease -
  DV155_RS01555 pilX 279692..280165 (-) 474 WP_205254963.1 PilX family type IV pilin Machinery gene
  DV155_RS01560 pilK 280170..280763 (-) 594 WP_115431786.1 pilus assembly protein Machinery gene
  DV155_RS01565 pilJ 280742..281689 (-) 948 WP_041423518.1 PilW family protein Machinery gene
  DV155_RS01570 pilV 281686..282309 (-) 624 WP_115431813.1 type IV pilus modification protein PilV Regulator
  DV155_RS01575 pilH 282342..283007 (-) 666 WP_101118812.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DV155_RS01580 dnaB 283309..284715 (-) 1407 WP_002213843.1 replicative DNA helicase -
  DV155_RS01590 - 284878..285465 (+) 588 WP_002242525.1 superoxide dismutase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21744.63 Da        Isoelectric Point: 6.3842

>NTDB_id=264235 DV155_RS01560 WP_115431786.1 280170..280763(-) (pilK) [Neisseria meningitidis strain M21374]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCGKGLCTAVNVRTNNDNEEAFDNIVVQGKPTVEAVKRFCPANSTNLCIDNKGTEYKKGTRSVSKMPRYIIE
YLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 594 bp        

>NTDB_id=264235 DV155_RS01560 WP_115431786.1 280170..280763(-) (pilK) [Neisseria meningitidis strain M21374]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTTGCACTGTTTATCGTGCTGATGGT
GATGATCGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTGGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGGAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATAATGATAATGA
AGAGGCTTTTGACAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTTTTGCCCTGCAAATTCTACCA
ACCTGTGCATTGACAATAAAGGGACGGAATATAAGAAAGGCACGAGAAGCGTCAGCAAAATGCCACGTTATATTATCGAA
TATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGTGGTCGT
CCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterProScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-192)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

87.129

100

0.893