Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   APL_RS09350 Genome accession   NC_009053
Coordinates   1995709..1996365 (-) Length   218 a.a.
NCBI ID   WP_005609196.1    Uniprot ID   A0ABM6X5L2
Organism   Actinobacillus pleuropneumoniae serovar 5b str. L20     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1990709..2001365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APL_RS09330 (APL_1754) nanA 1991083..1991961 (+) 879 WP_005599265.1 N-acetylneuraminate lyase -
  APL_RS09335 (APL_1755) nagB 1992011..1992814 (+) 804 WP_005599267.1 glucosamine-6-phosphate deaminase -
  APL_RS09340 (APL_1756) nagA 1992866..1994011 (+) 1146 WP_005599269.1 N-acetylglucosamine-6-phosphate deacetylase -
  APL_RS09345 (APL_1757) fumC 1994160..1995554 (-) 1395 WP_005605803.1 class II fumarate hydratase -
  APL_RS09350 (APL_1758) sxy/tfoX 1995709..1996365 (-) 657 WP_005609196.1 TfoX/Sxy family DNA transformation protein Regulator
  APL_RS09355 (APL_1759) rpsJ 1996773..1997084 (+) 312 WP_001181005.1 30S ribosomal protein S10 -
  APL_RS09360 (APL_1760) rplC 1997110..1997736 (+) 627 WP_005599280.1 50S ribosomal protein L3 -
  APL_RS09365 (APL_1761) rplD 1997752..1998354 (+) 603 WP_005599282.1 50S ribosomal protein L4 -
  APL_RS09370 (APL_1762) rplW 1998351..1998656 (+) 306 WP_005599290.1 50S ribosomal protein L23 -
  APL_RS09375 (APL_1763) rplB 1998677..1999498 (+) 822 WP_005599291.1 50S ribosomal protein L2 -
  APL_RS09380 (APL_1764) rpsS 1999526..1999801 (+) 276 WP_005539416.1 30S ribosomal protein S19 -
  APL_RS09385 (APL_1765) rplV 1999812..2000144 (+) 333 WP_005599292.1 50S ribosomal protein L22 -
  APL_RS09390 (APL_1766) rpsC 2000163..2000870 (+) 708 WP_005599293.1 30S ribosomal protein S3 -
  APL_RS09395 (APL_1767) rplP 2000884..2001294 (+) 411 WP_005599294.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 25633.15 Da        Isoelectric Point: 9.9359

>NTDB_id=26405 APL_RS09350 WP_005609196.1 1995709..1996365(-) (sxy/tfoX) [Actinobacillus pleuropneumoniae serovar 5b str. L20]
MAISPKKFQYLKEIFSPLGEINFKSYFSYLGIFKDDTMFALYDHKNDRLYLRKSAQFYPDIIRTIPIHFLIDRRIGKQQS
HIFYLIPSSIIHNLHLYTHWILSAIEEYQTAKAKLISQNKNKIRLLPNLNINIERLLARIEIYTVDDLKNVGVINAFVKL
IMLGLEVTELLLFKLYAALEHKYIYMLSKQEKQSLLIEADLSLYNAGLRKRFAISQAN

Nucleotide


Download         Length: 657 bp        

>NTDB_id=26405 APL_RS09350 WP_005609196.1 1995709..1996365(-) (sxy/tfoX) [Actinobacillus pleuropneumoniae serovar 5b str. L20]
ATGGCAATATCCCCAAAAAAGTTCCAATATCTTAAGGAGATTTTTAGTCCTCTTGGAGAAATTAACTTCAAAAGCTATTT
TTCTTACTTAGGAATATTTAAAGACGATACTATGTTCGCCCTCTATGATCATAAAAACGATCGATTATACTTAAGAAAAT
CCGCTCAATTTTATCCGGATATTATAAGAACAATACCGATACATTTTTTAATTGATCGTCGTATCGGTAAGCAACAATCT
CATATTTTTTATCTTATACCTTCTTCTATTATTCACAATCTTCATTTATATACTCATTGGATTCTCTCTGCTATCGAAGA
ATATCAAACTGCAAAGGCCAAATTGATTTCTCAAAATAAAAATAAAATTCGTCTGCTTCCCAATTTGAATATCAATATAG
AAAGATTATTGGCACGTATTGAGATTTATACCGTAGATGATTTAAAAAACGTAGGCGTGATTAATGCGTTTGTAAAACTG
ATAATGCTAGGCTTGGAAGTAACCGAATTACTCCTCTTCAAACTCTACGCTGCGCTCGAACATAAATATATCTATATGTT
ATCCAAGCAAGAAAAACAATCCCTATTAATTGAAGCCGATTTATCTCTCTATAACGCAGGCCTACGTAAACGCTTCGCTA
TCTCACAGGCTAACTAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(120-196)

TfoX N-terminal domain (TfoX_N)

(13-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Actinobacillus pleuropneumoniae strain HS143

100

100

1
  sxy/tfoX Actinobacillus suis H91-0380

63.721

98.624

0.628
  sxy/tfoX Glaesserella parasuis strain SC1401

39.234

95.872

0.376

Multiple sequence alignment