Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   APL_RS03990 Genome accession   NC_009053
Coordinates   875330..877624 (-) Length   764 a.a.
NCBI ID   WP_011848462.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae serovar 5b str. L20     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 870330..882624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APL_RS03965 (APL_0761) - 870918..871160 (-) 243 WP_005601001.1 alternative ribosome-rescue factor A -
  APL_RS03970 (APL_0762) - 871328..872083 (+) 756 WP_009874881.1 class I SAM-dependent methyltransferase -
  APL_RS03975 (APL_0763) - 872142..873203 (+) 1062 WP_005612034.1 AI-2E family transporter -
  APL_RS03980 (APL_0764) yvcK 873233..874162 (+) 930 WP_005612036.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -
  APL_RS03985 (APL_0765) queA 874210..875295 (+) 1086 WP_009874882.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  APL_RS03990 (APL_0766) rec2 875330..877624 (-) 2295 WP_011848462.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  APL_RS03995 (APL_0767) sstT 877724..878938 (-) 1215 WP_005597199.1 serine/threonine transporter SstT -
  APL_RS04000 (APL_0768) - 879187..879549 (+) 363 WP_005597201.1 diacylglycerol kinase -
  APL_RS04005 (APL_0769) ushA 879630..881273 (+) 1644 WP_005607695.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA -
  APL_RS04010 (APL_0770) - 881728..882330 (+) 603 WP_011848463.1 transposase -

Sequence

Protein


Download         Length: 764 a.a.        Molecular weight: 88781.81 Da        Isoelectric Point: 9.6396

>NTDB_id=26376 APL_RS03990 WP_011848462.1 875330..877624(-) (rec2) [Actinobacillus pleuropneumoniae serovar 5b str. L20]
MNLDRFSILICLTFLPLLWLPYQWFAFVILLFLIVVLYGLYTRCLMLLVFALVMGGSYYSVWQFAKKAENQTAGKYYEKI
EITRLVKQSTYQTAIAKRENNEQIYLHWQSDVPLVLGATYQAELQFRPISARANIGNFDRQRWYFAQHLQGSTTVREAKR
IEREQSTLRQAFLTKVRRQTETLAAQGLLLALAFGERAWINEHHWQIFQKTSTAHLIAISGLHIGLAFLCGFWCAKALQW
CLLRCKSWQAVGFYYFFAHIIGIIFAIGYSYFAGFSIPTIRALTAICFVLLCRFLRYHYTPWQYWWRVVTVLLLFDPITV
LSDSFWLSILAVMSLLIWYQYFPLSAFLRKFAYRKWGKIVRFCLGLIHLQCGILLIFTPVQFFFFEGISLTALPANLVIV
PLYSFVLVPLVLIGLLTDNGFNTWQLANRLIGYSLDYLETISQQWIWLSHRQQAQWLIIDLAILFILYGILHARTALYWY
KRYALLLCCQCVFYLFQLDKVPLQWITFDVGQGLAQAFIYYDTSGQKKAIFYDTGIGWGKHDNGGSMASIEILPYLRRHQ
IEVEAIFLSHDDNDHSGGAADLLNAYPNARLISSSLKPYANVQPEACIQGKRWRFGRLEFEAVYPKERVERAKNADSCII
LVKFDRFQILLTGDTGIEQERKIAELLNGIDFLQVAHHGSKTSSSHTLLAKSKPQLAVVSVGRWNPWRMPHPKVVERFEQ
HKIPLVTTAKQGMIIVNFDSDKWQLKTARNDFSPWYRRLYGKNR

Nucleotide


Download         Length: 2295 bp        

>NTDB_id=26376 APL_RS03990 WP_011848462.1 875330..877624(-) (rec2) [Actinobacillus pleuropneumoniae serovar 5b str. L20]
ATGAATCTTGACCGCTTTTCTATTCTTATTTGTCTCACTTTTTTACCTCTTCTTTGGCTGCCGTATCAATGGTTTGCTTT
TGTTATTCTTCTTTTTCTAATTGTTGTGCTATACGGTTTATATACGCGTTGTTTAATGCTGCTGGTATTTGCGTTAGTAA
TGGGTGGAAGTTATTACTCCGTATGGCAGTTTGCAAAAAAGGCCGAAAATCAGACCGCCGGTAAATACTACGAAAAAATT
GAAATAACTCGTTTGGTTAAACAATCGACTTATCAAACGGCAATTGCTAAAAGGGAGAATAATGAACAGATTTATCTGCA
TTGGCAAAGTGACGTTCCTTTGGTTTTAGGCGCAACTTATCAGGCGGAACTGCAGTTTCGTCCGATTTCTGCACGTGCGA
ATATAGGTAATTTTGATCGGCAACGTTGGTATTTCGCCCAACATTTACAGGGAAGTACGACTGTACGAGAAGCAAAGCGA
ATTGAGCGGGAGCAAAGCACATTACGTCAAGCGTTCTTAACTAAGGTTCGACGACAGACCGAAACATTAGCCGCTCAAGG
ACTATTACTTGCTTTGGCATTCGGTGAACGAGCGTGGATTAATGAGCATCATTGGCAAATTTTCCAAAAGACTTCAACCG
CACATTTAATTGCGATTTCCGGCTTACATATCGGTTTGGCGTTTTTATGCGGATTTTGGTGCGCTAAGGCGTTGCAATGG
TGTTTATTACGTTGTAAGAGCTGGCAAGCGGTTGGATTTTACTACTTTTTTGCTCATATTATCGGAATCATTTTTGCGAT
AGGTTATAGTTATTTTGCCGGATTCTCCATACCGACCATACGTGCATTGACGGCGATTTGCTTCGTATTATTATGTCGAT
TCCTGCGCTATCACTATACGCCGTGGCAATATTGGTGGCGGGTTGTCACGGTATTGTTATTATTTGATCCGATTACCGTG
TTATCAGACAGTTTTTGGCTTTCTATTTTAGCCGTGATGAGTTTACTGATTTGGTATCAATATTTCCCGTTATCCGCTTT
TTTAAGAAAGTTTGCCTATCGTAAATGGGGAAAAATCGTTCGATTTTGTCTCGGACTCATCCATTTACAATGCGGTATTT
TGCTTATTTTTACCCCGGTACAATTTTTCTTTTTTGAGGGCATATCGCTTACGGCACTACCGGCAAATTTAGTGATCGTA
CCTTTATATAGTTTCGTATTAGTACCCTTGGTTTTAATCGGCTTATTAACCGATAACGGCTTTAATACTTGGCAATTAGC
GAATAGATTAATCGGCTATAGTTTAGATTATTTAGAAACGATTTCTCAACAGTGGATTTGGTTGAGTCATCGACAACAGG
CGCAATGGCTGATTATTGACTTAGCGATATTGTTTATTTTATATGGCATATTACATGCGCGAACCGCATTATACTGGTAT
AAAAGATATGCTTTATTATTGTGTTGTCAATGCGTTTTCTATTTATTTCAATTAGATAAAGTACCGTTACAGTGGATCAC
TTTTGATGTCGGGCAAGGGTTGGCTCAGGCGTTTATTTATTATGATACAAGCGGTCAAAAAAAGGCGATTTTTTACGATA
CTGGGATTGGATGGGGAAAGCATGATAACGGCGGATCTATGGCTTCGATTGAAATACTACCTTATTTACGCCGCCATCAA
ATTGAAGTCGAAGCCATATTTTTAAGCCATGACGATAATGATCATTCCGGCGGAGCGGCGGATTTACTTAACGCTTATCC
GAATGCAAGACTTATTTCAAGTAGCCTTAAACCTTATGCAAACGTTCAACCTGAGGCTTGTATTCAAGGAAAAAGATGGC
GATTCGGCAGATTAGAATTTGAAGCCGTTTATCCTAAAGAGCGTGTAGAAAGAGCGAAAAATGCCGATTCTTGCATCATT
TTGGTAAAATTCGACCGCTTTCAAATATTATTAACCGGCGATACCGGCATTGAGCAAGAACGAAAAATCGCAGAACTATT
AAATGGTATTGATTTTTTGCAGGTGGCTCATCACGGCAGTAAAACCAGTAGTAGTCATACGCTATTGGCAAAAAGCAAAC
CTCAGTTAGCGGTAGTTTCCGTCGGGCGGTGGAACCCGTGGAGAATGCCTCATCCAAAAGTGGTTGAAAGATTTGAACAG
CATAAGATTCCGTTAGTGACTACGGCAAAGCAGGGAATGATCATTGTTAATTTTGATTCGGATAAATGGCAATTAAAGAC
GGCTCGAAACGATTTTTCACCTTGGTATCGGCGTTTATACGGAAAAAATAGATAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(525-702)

Competence protein (Competence)

(192-468)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

40.621

100

0.411