Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   DV129_RS09530 Genome accession   NZ_CP031247
Coordinates   1748374..1749273 (+) Length   299 a.a.
NCBI ID   WP_000904849.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain M23734     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1743374..1754273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV129_RS09490 - 1743545..1743838 (+) 294 WP_000977367.1 hypothetical protein -
  DV129_RS09495 - 1743994..1745208 (+) 1215 WP_000666471.1 pyridoxal phosphate-dependent aminotransferase -
  DV129_RS09500 rpmH 1745353..1745487 (+) 135 WP_000831905.1 50S ribosomal protein L34 -
  DV129_RS09510 - 1745771..1746664 (+) 894 WP_000226482.1 DUF1542 domain-containing protein -
  DV129_RS09520 - 1746969..1747742 (+) 774 WP_000575608.1 TatD family hydrolase -
  DV129_RS09525 rnmV 1747742..1748302 (+) 561 WP_000660013.1 ribonuclease M5 -
  DV129_RS09530 comR 1748374..1749273 (+) 900 WP_000904849.1 helix-turn-helix transcriptional regulator Regulator
  DV129_RS09535 - 1749542..1751571 (+) 2030 Protein_1769 bacteriocin-associated integral membrane family protein -
  DV129_RS09540 - 1751573..1752214 (+) 642 WP_000565531.1 ABC transporter ATP-binding protein -
  DV129_RS09545 - 1752207..1752500 (+) 294 Protein_1771 hypothetical protein -
  DV129_RS09550 rsmA 1752751..1753623 (+) 873 WP_001216845.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 35419.19 Da        Isoelectric Point: 4.7732

>NTDB_id=263303 DV129_RS09530 WP_000904849.1 1748374..1749273(+) (comR) [Streptococcus pneumoniae strain M23734]
MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLDYIARRLGVPVYSLMPDFSALPPAYLELKYQI
LREPIYGKEEEYDKKEACLEEIYKTYFDNLPKEEQLACEVLQACLDTSRTRRPEYAELILEEHMPQIIEKEVYSTNDMLL
IRLFFYQMLIRKDLAKFINQIEKLMLFLLEQKKVTKLENFFIIRDTLISGMCCLEKVGVTDCFNDYLSCLQEIMDKTQDY
QKKPLVFMFLWKQALREERDFSLAESFYQSSKTFAQLIGDEFLVKKLTEEWQEDVKKYL

Nucleotide


Download         Length: 900 bp        

>NTDB_id=263303 DV129_RS09530 WP_000904849.1 1748374..1749273(+) (comR) [Streptococcus pneumoniae strain M23734]
ATGTTAATTGGTCAAAAAATTAAAGAGATTCGGATAGAAAAAGGAATTAGTCGTCCAGATTTTTGTGGAGATGAGCAAGA
ACTGACAGTTCGTCAACTGTCGCGAATTGAAAGTGGAGCTTCGCAACCGAGTTTGCCCAAGTTAGACTATATTGCTCGCC
GGCTAGGAGTTCCAGTTTATAGCCTTATGCCGGATTTTTCAGCTCTTCCTCCTGCTTATTTAGAATTGAAATACCAGATT
TTACGTGAACCAATCTATGGTAAAGAAGAGGAGTACGATAAGAAGGAAGCGTGTTTGGAAGAGATTTATAAAACATACTT
TGATAATCTTCCTAAAGAAGAACAATTAGCATGTGAAGTATTGCAGGCGTGTTTGGATACTTCTAGAACTAGAAGGCCTG
AATATGCAGAGTTAATACTTGAGGAACATATGCCTCAGATCATAGAAAAAGAAGTTTATTCAACAAATGATATGTTGTTG
ATTCGTTTGTTTTTTTATCAAATGCTCATTAGAAAAGATCTTGCCAAATTTATAAATCAAATCGAAAAGCTAATGCTCTT
TCTTTTGGAACAGAAAAAGGTAACTAAATTAGAAAACTTCTTTATAATTAGAGATACTCTTATTTCAGGAATGTGTTGTC
TTGAAAAGGTAGGAGTAACTGATTGTTTTAATGATTATCTATCGTGTTTACAAGAAATTATGGATAAAACTCAAGATTAT
CAAAAGAAACCTCTTGTATTTATGTTTTTGTGGAAGCAAGCATTAAGAGAAGAAAGAGATTTTAGTTTAGCTGAATCATT
TTATCAGTCTTCTAAAACATTTGCGCAGCTAATTGGAGATGAATTTCTAGTAAAGAAATTGACAGAGGAATGGCAAGAGG
ATGTCAAAAAATATTTATAA

Domains

Predicted by InterProScan.

ComR tetratricopeptide (ComR_TPR)

(70-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus mutans UA159

37.755

98.328

0.371
  comR Streptococcus suis 05ZYH33

37.457

97.324

0.365
  comR Streptococcus suis P1/7

37.457

97.324

0.365
  comR Streptococcus pyogenes MGAS8232

36.577

99.666

0.365

Multiple sequence alignment