Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   DV131_RS01585 Genome accession   NZ_CP031246
Coordinates   280988..281887 (-) Length   299 a.a.
NCBI ID   WP_000904862.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain M26368     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 275988..286887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV131_RS01560 rsmA 276318..277190 (-) 873 WP_054383079.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  DV131_RS01565 - 277321..277629 (-) 309 WP_000333257.1 hypothetical protein -
  DV131_RS01570 - 277622..278263 (-) 642 WP_000565531.1 ABC transporter ATP-binding protein -
  DV131_RS01575 - 278265..280295 (-) 2031 WP_000825246.1 bacteriocin-associated integral membrane family protein -
  DV131_RS01580 - 280372..280668 (-) 297 WP_000815392.1 lactococcin 972 family bacteriocin -
  DV131_RS01585 comR 280988..281887 (-) 900 WP_000904862.1 helix-turn-helix transcriptional regulator Regulator
  DV131_RS01590 rnmV 281959..282519 (-) 561 WP_050273924.1 ribonuclease M5 -
  DV131_RS01595 - 282519..283292 (-) 774 WP_114865822.1 TatD family hydrolase -
  DV131_RS01605 - 283597..284490 (-) 894 WP_000226482.1 DUF1542 domain-containing protein -
  DV131_RS01610 rpmH 284774..284908 (-) 135 WP_000831905.1 50S ribosomal protein L34 -
  DV131_RS01615 - 285053..286267 (-) 1215 WP_000666469.1 pyridoxal phosphate-dependent aminotransferase -
  DV131_RS01620 - 286423..286716 (-) 294 WP_000977364.1 hypothetical protein -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 35409.16 Da        Isoelectric Point: 4.7732

>NTDB_id=263107 DV131_RS01585 WP_000904862.1 280988..281887(-) (comR) [Streptococcus pneumoniae strain M26368]
MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLDYIARRLGVPVYSLMPDFSALPSAYLELKYQI
LREPIYGKEEEYDKKEACLEEIYKTYFDNLPKEEQLACEVLQACLDTSRTRRPEYAELILEEHMPQIIEKEVYSTNDMLL
IRLFFYQMLIRKDLAKFINQIEKLMLFLLEQKKVTKLENFFIIRDTLISGMCCLEKVGVTDCFNDYLSCLQEIMDKTQDY
QKKPLVFMFLWKQALREERDFSLAESFYQSSKTFAQLIGDEFLVKKLTEEWQEDVKKYL

Nucleotide


Download         Length: 900 bp        

>NTDB_id=263107 DV131_RS01585 WP_000904862.1 280988..281887(-) (comR) [Streptococcus pneumoniae strain M26368]
ATGTTAATTGGTCAAAAAATTAAAGAGATTCGGATAGAAAAAGGAATTAGTCGTCCAGATTTTTGTGGAGATGAGCAAGA
ACTGACAGTTCGTCAACTGTCGCGAATTGAAAGTGGAGCTTCGCAACCGAGTTTGCCCAAGTTAGACTATATTGCTCGCC
GGCTAGGAGTTCCAGTTTATAGCCTTATGCCGGATTTTTCAGCTCTTCCTTCTGCTTATTTAGAATTGAAATACCAGATT
TTACGTGAACCAATCTATGGTAAAGAAGAGGAGTACGATAAGAAGGAAGCGTGTTTGGAAGAGATTTATAAAACATACTT
TGATAATCTTCCTAAAGAAGAACAATTAGCATGTGAAGTATTGCAGGCGTGTTTGGATACTTCTAGAACTAGAAGGCCTG
AATATGCAGAGTTAATACTTGAGGAACATATGCCTCAGATCATAGAAAAAGAAGTTTATTCAACAAATGATATGTTGTTG
ATTCGTTTGTTTTTTTATCAAATGCTCATTAGAAAAGATCTTGCCAAATTTATAAATCAAATCGAAAAGCTAATGCTCTT
TCTTTTGGAACAGAAAAAGGTAACTAAATTAGAAAACTTCTTTATAATTAGAGATACTCTTATTTCAGGAATGTGTTGTC
TTGAAAAGGTAGGAGTAACTGATTGTTTTAATGATTATCTATCGTGTTTACAAGAAATTATGGATAAAACTCAAGATTAT
CAAAAGAAACCTCTTGTATTTATGTTTTTGTGGAAGCAAGCATTAAGAGAAGAAAGAGATTTTAGTTTAGCTGAATCATT
TTATCAGTCTTCTAAAACATTTGCGCAGCTAATTGGAGATGAATTTCTAGTAAAGAAATTGACAGAGGAATGGCAAGAGG
ATGTCAAAAAATATTTATAA

Domains

Predicted by InterProScan.

ComR tetratricopeptide (ComR_TPR)

(70-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus mutans UA159

38.095

98.328

0.375
  comR Streptococcus suis P1/7

37.457

97.324

0.365
  comR Streptococcus suis 05ZYH33

37.457

97.324

0.365
  comR Streptococcus pyogenes MGAS8232

36.577

99.666

0.365