Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   DV119_RS08665 Genome accession   NZ_CP031245
Coordinates   1603100..1604170 (+) Length   356 a.a.
NCBI ID   WP_114880831.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain M16808     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1598100..1609170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV119_RS12190 - 1598984..1599175 (+) 192 WP_350339622.1 LPXTG cell wall anchor domain-containing protein -
  DV119_RS08650 ylqF 1599342..1600193 (+) 852 WP_000201299.1 ribosome biogenesis GTPase YlqF -
  DV119_RS08655 - 1600180..1600959 (+) 780 WP_000201135.1 ribonuclease HII -
  DV119_RS08660 - 1600975..1602525 (+) 1551 WP_000392545.1 ClC family H(+)/Cl(-) exchange transporter -
  DV119_RS08665 xerS 1603100..1604170 (+) 1071 WP_114880831.1 tyrosine recombinase XerS Machinery gene
  DV119_RS08670 - 1604243..1605232 (-) 990 WP_000873993.1 lipoate--protein ligase -
  DV119_RS08675 lpdA 1605296..1606999 (-) 1704 WP_050204641.1 dihydrolipoyl dehydrogenase -
  DV119_RS08680 - 1607045..1608088 (-) 1044 WP_000752697.1 dihydrolipoamide acetyltransferase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41160.32 Da        Isoelectric Point: 9.8539

>NTDB_id=263063 DV119_RS08665 WP_114880831.1 1603100..1604170(+) (xerS) [Streptococcus pneumoniae strain M16808]
MKRKILLERIDKLKQLMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFSWVLESGISNADKISDIPLSVLENMSKKDME
SFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVENYQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETAGFLTYIDQEHPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMVIDVTRKGGKRDS
VNVAAFAKPYLENYLAIRNQRYKTEKTDTALFLTLYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=263063 DV119_RS08665 WP_114880831.1 1603100..1604170(+) (xerS) [Streptococcus pneumoniae strain M16808]
ATGAAACGTAAGATTTTACTGGAACGAATCGACAAACTAAAACAACTCATGCCCTGGTATGTTCTGGAATACTACCAATC
TAAACTGGCTGTGCCCTACAGTTTTACAACCCTGTACGAATACCTTAAGGAATATGACCGATTTTTCAGCTGGGTTTTGG
AGTCTGGTATTTCAAACGCTGATAAAATATCCGATATTCCTTTATCAGTTTTGGAAAATATGTCTAAGAAAGACATGGAA
TCCTTTATCCTTTATCTACGTGAACGTCCCTTGCTGAATGCTAATACAACAAAACAAGGTGTTTCACAGACAACTATCAA
TCGAACCTTATCAGCACTTTCTAGTCTTTACAAGTATCTAACCGAGGAGGTTGAAAACTATCAGGGGGAACCTTATTTCT
ATCGTAATGTAATGAAAAAAGTTTCAACCAAGAAAAAGAAAGAAACCCTTGCTGCCAGAGCTGAAAATATCAAGCAAAAA
CTCTTTCTAGGTGATGAAACAGCAGGTTTTCTAACTTATATCGATCAAGAGCACCCACAACAGCTTTCAAATCGAGCTCT
CTCATCATTCAACAAAAATAAAGAACGAGATTTAGCCATTATTGCCCTTCTCTTGGCATCTGGTGTTCGCTTATCTGAAG
CTGTTAATCTAGATCTAAGAGATCTCAATCTAAAAATGATGGTTATTGATGTTACTCGAAAAGGTGGCAAACGTGACTCA
GTCAATGTCGCTGCTTTTGCTAAACCTTATTTAGAGAATTATCTGGCCATTCGGAATCAACGCTATAAAACGGAAAAAAC
AGATACAGCCCTTTTTTTAACTCTCTACAGAGGTGTTCCTAATCGTATCGATGCTTCTAGCGTTGAGAAAATGGTTGCTA
AATACTCAGAGGATTTTAAAGTGCGTGTAACACCCCATAAACTGCGCCATACGCTAGCAACTAGGCTCTATGATGCGACT
AAATCACAAGTTTTAGTCAGTCACCAACTAGGACATGCCAGCACACAAGTCACTGACCTCTATACCCATATTGTTAATGA
TGAACAAAAGAATGCTCTAGATAGTTTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(188-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_1)

(71-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

99.157

100

0.992