Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   C0119_RS11550 Genome accession   NZ_CP025618
Coordinates   2390633..2391670 (+) Length   345 a.a.
NCBI ID   WP_008305550.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain SGAir0122     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2385633..2396670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0119_RS11540 (C0119_10760) - 2388670..2389776 (+) 1107 WP_108675840.1 acyltransferase family protein -
  C0119_RS11545 (C0119_10755) - 2389823..2390509 (-) 687 WP_008305552.1 YggS family pyridoxal phosphate-dependent enzyme -
  C0119_RS11550 (C0119_10750) pilT 2390633..2391670 (+) 1038 WP_008305550.1 type IV pilus twitching motility protein PilT Machinery gene
  C0119_RS11555 (C0119_10745) pilU 2391703..2392824 (+) 1122 WP_008305547.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  C0119_RS11560 (C0119_10740) fur 2392899..2393336 (-) 438 WP_004811125.1 ferric iron uptake transcriptional regulator -
  C0119_RS11565 (C0119_10735) - 2393449..2393847 (+) 399 WP_008305544.1 outer membrane protein assembly factor BamE -
  C0119_RS11570 (C0119_10730) - 2393957..2394283 (-) 327 WP_108675839.1 RnfH family protein -
  C0119_RS11575 (C0119_10725) - 2394283..2395362 (-) 1080 WP_108675838.1 hypothetical protein -
  C0119_RS11580 (C0119_10720) - 2395501..2395956 (-) 456 WP_108675837.1 bacteriohemerythrin -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38207.80 Da        Isoelectric Point: 6.5056

>NTDB_id=263061 C0119_RS11550 WP_008305550.1 2390633..2391670(+) (pilT) [Acinetobacter schindleri strain SGAir0122]
MDITELLAFSAKNGASDLHLSAGLPPMIRVDGEVRRINLPALEHKEVHKLVYDIMNDKQRRDFEENLETDFSFEVPGVAR
FRVNAFNQNRGAGAVFRTIPSKVLTLEDLGMGQIFKDICEYPRGLVLVTGPTGSGKSTTLAAMLDYINDNRYDHILTVED
PIEFVHQSKKCLINQREVHRDTHGFNEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRV
IDVFPAEEKDMVRAMLSESLQAVVSQTLLKKNGGGRVAAHEIMIGIPAIRNLIRENKVAQMYSAIQTGANYGMTTLDQSL
KTLVSKGVISPQVARTAAKQPESFL

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=263061 C0119_RS11550 WP_008305550.1 2390633..2391670(+) (pilT) [Acinetobacter schindleri strain SGAir0122]
ATGGATATCACAGAATTGTTGGCATTTTCTGCTAAAAATGGTGCGTCGGATTTACACTTGTCTGCGGGCTTACCGCCAAT
GATTCGTGTCGATGGGGAAGTTCGTCGCATCAACCTGCCAGCATTAGAACACAAAGAAGTGCATAAACTCGTTTATGACA
TCATGAACGATAAACAGCGCCGTGATTTTGAAGAAAATCTGGAAACTGACTTCTCTTTTGAAGTGCCTGGCGTGGCCCGT
TTCCGTGTCAACGCATTTAACCAGAACCGCGGTGCCGGTGCGGTATTCCGTACCATTCCCTCTAAAGTCCTGACCCTTGA
AGATCTGGGCATGGGACAGATTTTTAAGGATATCTGTGAATATCCACGTGGTCTGGTACTGGTCACAGGTCCAACCGGTT
CGGGTAAATCAACCACATTGGCGGCGATGCTGGATTATATTAATGACAACCGCTATGACCATATTCTGACCGTCGAAGAT
CCAATTGAATTTGTACACCAATCCAAAAAATGTCTGATCAACCAGCGTGAAGTGCATCGTGACACGCATGGTTTCAATGA
AGCATTACGTTCTGCATTACGTGAAGACCCGGATATTATCCTGGTGGGTGAGATGCGTGACCTTGAAACCATCCGTCTGG
CACTCACTGCTGCTGAAACCGGTCACCTGGTGTTTGGCACCCTGCATACGACTTCTGCTGCTAAAACTATTGACCGTGTG
ATCGACGTATTCCCGGCCGAAGAAAAAGACATGGTTCGTGCCATGCTGTCTGAATCATTACAAGCAGTCGTTTCACAAAC
CCTGCTCAAGAAAAATGGTGGTGGTCGTGTCGCTGCACATGAAATCATGATCGGTATTCCGGCTATCCGTAACCTGATCC
GTGAAAACAAAGTTGCTCAAATGTACTCTGCCATTCAGACCGGTGCCAACTATGGTATGACTACGCTGGATCAGAGCCTG
AAAACACTGGTATCTAAAGGCGTGATCAGCCCACAAGTTGCGCGTACTGCTGCTAAACAGCCTGAATCTTTCCTATAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(12-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

95.072

100

0.951
  pilT Acinetobacter baumannii D1279779

94.783

100

0.948
  pilT Acinetobacter baumannii strain A118

94.783

100

0.948
  pilT Acinetobacter baylyi ADP1

87.209

99.71

0.87
  pilT Pseudomonas aeruginosa PAK

84.884

99.71

0.846
  pilT Pseudomonas stutzeri DSM 10701

84.593

99.71

0.843
  pilT Legionella pneumophila strain Lp02

74.419

99.71

0.742
  pilT Legionella pneumophila strain ERS1305867

74.419

99.71

0.742
  pilT Neisseria meningitidis 8013

68.696

100

0.687
  pilT Neisseria gonorrhoeae MS11

68.116

100

0.681
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

70.181

96.232

0.675
  pilT Vibrio cholerae strain A1552

70.181

96.232

0.675
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

52.174

100

0.522
  pilU Vibrio cholerae strain A1552

41.298

98.261

0.406
  pilU Pseudomonas stutzeri DSM 10701

41.692

95.942

0.4
  pilU Acinetobacter baylyi ADP1

38.439

100

0.386

Multiple sequence alignment