Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   C0J00_RS00790 Genome accession   NZ_CP025536
Coordinates   144390..145418 (+) Length   342 a.a.
NCBI ID   WP_199773983.1    Uniprot ID   -
Organism   Streptococcus pluranimalium strain TH11417     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 139390..150418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0J00_RS00780 (C0J00_00780) - 143070..143450 (+) 381 WP_205407082.1 DUF1033 family protein -
  C0J00_RS00785 (C0J00_00785) comYA 143513..144466 (+) 954 WP_104967105.1 competence type IV pilus ATPase ComGA Machinery gene
  C0J00_RS00790 (C0J00_00790) comYB 144390..145418 (+) 1029 WP_199773983.1 competence type IV pilus assembly protein ComGB Machinery gene
  C0J00_RS00795 (C0J00_00795) comYC 145419..145712 (+) 294 WP_104967106.1 competence type IV pilus major pilin ComGC Machinery gene
  C0J00_RS00800 (C0J00_00800) comGD 145693..146109 (+) 417 WP_104967107.1 competence type IV pilus minor pilin ComGD -
  C0J00_RS00805 (C0J00_00805) comGE 146081..146380 (+) 300 WP_104967108.1 competence type IV pilus minor pilin ComGE -
  C0J00_RS00810 (C0J00_00810) comYF 146340..146795 (+) 456 WP_407697186.1 competence type IV pilus minor pilin ComGF Machinery gene
  C0J00_RS00815 (C0J00_00815) comGG 146779..147174 (+) 396 WP_199773973.1 competence type IV pilus minor pilin ComGG -
  C0J00_RS00820 (C0J00_00820) comYH 147217..148170 (+) 954 WP_104967110.1 class I SAM-dependent methyltransferase Machinery gene
  C0J00_RS00825 (C0J00_00825) - 148231..149421 (+) 1191 WP_104967111.1 acetate kinase -
  C0J00_RS00830 (C0J00_00830) - 149807..150004 (+) 198 WP_104967112.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 38945.39 Da        Isoelectric Point: 9.6648

>NTDB_id=262325 C0J00_RS00790 WP_199773983.1 144390..145418(+) (comYB) [Streptococcus pluranimalium strain TH11417]
MSFLKQDISLRSRLKPRVLAIQKQVKIIKLFNTLLSSGFNLPETVDFLKRSQLIPDKQVQIMYETLLAGFGLPVLMKNLG
FSDTVVTQLSLAETHGNSQKTLSKIENYLRQVSSVKKKLVEVGSYPIVLLVFLVLIMLGLKHYLLPQLAEGNTATAILEY
FPQFFLGGLFLSAILIFLAVRMAPKVEALRLYRFLSSLPFLGSLIQVYLTAYYAREWGNLLGQGVEMTRVVSLMQEQESR
LFVSIGRDMQAALLAGQSFHAKVLEYPFFLKELSLIIEYGNAKGHLGQELEVFSEELWEQFFYRVNRAMQLVQPLIFVMV
ALMIVMIYAAMLLPMYQSMEVM

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=262325 C0J00_RS00790 WP_199773983.1 144390..145418(+) (comYB) [Streptococcus pluranimalium strain TH11417]
TTGAGCTTTTTGAAGCAGGATATATCACTGAGGAGCAGGTTAAAACCGAGAGTATTAGCTATTCAGAAGCAGGTTAAAAT
CATAAAACTCTTTAATACTCTTTTGTCCTCGGGCTTTAATCTACCTGAAACGGTTGATTTCCTGAAGCGTAGTCAACTGA
TACCAGATAAACAGGTTCAAATCATGTATGAAACCTTGTTAGCTGGTTTTGGGTTACCGGTTTTGATGAAAAATTTGGGT
TTTTCAGATACAGTTGTCACGCAGCTATCTTTGGCAGAAACACATGGTAACAGTCAAAAGACTTTGTCTAAAATTGAAAA
TTATTTAAGACAGGTTAGTTCGGTTAAGAAAAAGCTGGTTGAAGTGGGATCTTACCCTATTGTGTTATTAGTTTTTTTGG
TTTTAATCATGCTGGGGCTAAAACATTATCTCTTACCTCAGCTAGCTGAAGGTAACACAGCGACAGCCATTTTAGAATAT
TTTCCTCAGTTCTTTTTAGGTGGGCTGTTCTTAAGTGCAATCCTTATCTTTTTAGCTGTTAGGATGGCACCAAAGGTGGA
AGCACTGAGGCTTTATCGGTTTTTGAGTAGTCTTCCTTTTTTGGGCAGTCTTATCCAAGTTTATTTGACGGCTTATTATG
CACGTGAATGGGGAAATCTTTTGGGACAGGGGGTTGAGATGACAAGGGTTGTGTCGCTCATGCAGGAACAGGAATCGCGA
CTGTTTGTAAGTATTGGTCGAGATATGCAGGCGGCACTTTTAGCTGGTCAATCCTTTCATGCTAAGGTTTTAGAGTATCC
ATTCTTCTTGAAAGAGTTAAGTCTGATTATTGAGTATGGTAATGCCAAAGGGCATCTTGGTCAAGAGTTAGAAGTTTTCT
CTGAAGAGCTTTGGGAACAGTTTTTTTATCGTGTGAATAGGGCTATGCAGTTAGTTCAGCCCCTTATTTTTGTCATGGTT
GCCTTGATGATTGTTATGATCTACGCAGCTATGCTTCTACCAATGTATCAATCTATGGAGGTTATGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(214-334)

Type II secretion system (T2SS), protein F (T2SSF)

(29-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

59.238

99.708

0.591
  comYB Streptococcus mutans UA159

59.238

99.708

0.591
  comYB Streptococcus gordonii str. Challis substr. CH1

53.561

100

0.55
  comGB/cglB Streptococcus mitis NCTC 12261

54.328

97.953

0.532
  comGB/cglB Streptococcus mitis SK321

53.731

97.953

0.526
  comGB/cglB Streptococcus pneumoniae Rx1

52.836

97.953

0.518
  comGB/cglB Streptococcus pneumoniae D39

52.836

97.953

0.518
  comGB/cglB Streptococcus pneumoniae R6

52.836

97.953

0.518
  comGB/cglB Streptococcus pneumoniae TIGR4

52.836

97.953

0.518
  comGB Lactococcus lactis subsp. cremoris KW2

47.181

98.538

0.465

Multiple sequence alignment