Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   LLG50_RS08770 Genome accession   NZ_CP025500
Coordinates   1799094..1800083 (-) Length   329 a.a.
NCBI ID   WP_103055046.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain G50     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1794094..1805083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLG50_RS08755 (LLG50_08755) - 1795460..1796386 (-) 927 WP_010906107.1 peptidyl-prolyl cis-trans isomerase -
  LLG50_RS08760 (LLG50_08760) - 1796540..1797223 (-) 684 WP_010906108.1 O-methyltransferase -
  LLG50_RS08765 (LLG50_08765) pepF 1797226..1799031 (-) 1806 WP_026138936.1 oligoendopeptidase F Regulator
  LLG50_RS08770 (LLG50_08770) coiA 1799094..1800083 (-) 990 WP_103055046.1 competence protein CoiA Machinery gene
  LLG50_RS08775 (LLG50_08775) - 1800157..1801242 (-) 1086 WP_103055047.1 YdcF family protein -
  LLG50_RS08780 (LLG50_08780) - 1801404..1802252 (-) 849 WP_010906111.1 alpha/beta hydrolase -
  LLG50_RS08785 (LLG50_08785) - 1802444..1803865 (-) 1422 WP_012898314.1 NCS2 family permease -
  LLG50_RS08790 (LLG50_08790) - 1804172..1805008 (+) 837 WP_103055048.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 39433.95 Da        Isoelectric Point: 8.5227

>NTDB_id=262100 LLG50_RS08770 WP_103055046.1 1799094..1800083(-) (coiA) [Lactococcus lactis subsp. lactis strain G50]
MLTAIDENGQVVNLLEIEVKELTGKYFCPSCKSELFIKNGEIKVPHFAHKSLKACDLWLENESEQHLGLKKALYQWFKKT
DKVEIEAYLPEFKQRPDLLVNDKIAIEIQCSHLSMKRLKERTENYQVHGFTVLWLMGQDLWLKDQITELQKNLVYFSENR
GFYYWELDFKAQKMRLKSLIHEDLRGKIIYLQEEIPFGEGRLIEQLRLPFLSQKSLTIPLIVDLKLAEFIRRQLYYCSPK
WLKLQEKYYQRGENLLNLTFERSFIAPLGLNLLEVFDDKIPLHKFTQIKHNINLYYENFLINFQQNSFKEVYPPRFYAIM
KKQKKDMNE

Nucleotide


Download         Length: 990 bp        

>NTDB_id=262100 LLG50_RS08770 WP_103055046.1 1799094..1800083(-) (coiA) [Lactococcus lactis subsp. lactis strain G50]
ATGTTGACGGCAATTGATGAAAATGGACAAGTAGTAAACTTATTAGAAATAGAAGTAAAAGAACTGACAGGAAAATATTT
TTGTCCTTCTTGTAAATCAGAGTTATTTATAAAAAATGGTGAAATAAAGGTGCCTCACTTTGCTCATAAATCTCTCAAAG
CTTGTGACTTATGGCTTGAAAATGAATCTGAACAACATTTAGGATTAAAAAAAGCACTCTATCAATGGTTTAAAAAAACT
GATAAGGTGGAAATTGAAGCTTATCTTCCTGAATTTAAGCAGAGGCCAGATTTATTGGTAAATGATAAAATAGCTATTGA
AATTCAATGTTCTCATCTTTCTATGAAACGTTTAAAAGAAAGGACAGAGAATTATCAAGTCCACGGTTTTACGGTACTTT
GGCTTATGGGGCAAGATTTATGGTTAAAAGACCAAATAACAGAACTTCAAAAAAATCTAGTCTATTTTTCAGAAAATAGA
GGTTTCTATTATTGGGAGTTAGATTTCAAAGCTCAGAAGATGAGATTAAAATCCCTGATTCATGAAGATTTGCGTGGAAA
AATTATTTATTTACAAGAAGAAATTCCTTTTGGGGAAGGACGACTTATTGAGCAATTACGACTGCCTTTTTTATCACAAA
AGTCACTGACAATACCACTTATTGTTGATCTTAAACTAGCAGAATTTATTCGTCGGCAACTTTATTATTGTTCACCAAAA
TGGTTGAAACTTCAGGAAAAATATTATCAAAGAGGTGAAAATTTGTTGAATTTGACTTTTGAACGTTCATTTATTGCTCC
TTTGGGATTGAACTTACTTGAAGTTTTTGATGATAAAATTCCTTTACATAAATTTACTCAAATTAAGCATAATATTAATC
TCTATTATGAAAACTTTTTAATAAATTTTCAGCAAAATAGCTTTAAGGAAGTCTATCCTCCCCGTTTCTATGCTATAATG
AAAAAGCAGAAGAAGGATATGAATGAATGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

75.153

99.088

0.745
  coiA Streptococcus pneumoniae TIGR4

43.478

97.872

0.426
  coiA Streptococcus pneumoniae Rx1

43.478

97.872

0.426
  coiA Streptococcus pneumoniae D39

43.478

97.872

0.426
  coiA Streptococcus pneumoniae R6

43.478

97.872

0.426
  coiA Streptococcus mitis NCTC 12261

43.26

96.96

0.419

Multiple sequence alignment