Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   CR922_RS01805 Genome accession   NZ_CP025400
Coordinates   335694..336728 (+) Length   344 a.a.
NCBI ID   WP_373867015.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain EPS     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 330694..341728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CR922_RS10600 - 332603..332728 (+) 126 WP_011681534.1 hypothetical protein -
  CR922_RS01780 - 332747..333382 (+) 636 WP_011226440.1 DUF4230 domain-containing protein -
  CR922_RS10135 - 333452..333622 (+) 171 WP_011226439.1 hypothetical protein -
  CR922_RS01790 - 334174..334482 (-) 309 WP_011227487.1 hypothetical protein -
  CR922_RS01795 - 334479..334898 (-) 420 WP_011227486.1 HIT family protein -
  CR922_RS01800 pptA 334963..335694 (+) 732 WP_002951673.1 ABC transporter ATP-binding protein Regulator
  CR922_RS01805 pptB 335694..336728 (+) 1035 WP_373867015.1 ABC transporter permease Regulator
  CR922_RS01810 ccrZ 336786..337577 (+) 792 WP_002951667.1 cell cycle regulator CcrZ -
  CR922_RS01815 trmB 337587..338228 (+) 642 WP_002947526.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  CR922_RS01825 - 338464..339645 (-) 1182 WP_002951656.1 NAD(P)/FAD-dependent oxidoreductase -
  CR922_RS01830 ilvD 339758..341476 (+) 1719 WP_011226435.1 dihydroxy-acid dehydratase -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 39966.47 Da        Isoelectric Point: 10.4910

>NTDB_id=260972 CR922_RS01805 WP_373867015.1 335694..336728(+) (pptB) [Streptococcus thermophilus strain EPS]
MAELFKERSRRLTTRCAKYSRYVFNDHFILVLLFLLGFVLVQYSQLLRHFPKNPWAIILGLLVLCLLLPFWGNIATYLEP
ADKHYLLVKEEEVLDHIKKATGCAFRFWVLIQTLIFILVVPLFLALGLPVWGVVLVAVAMAILKYFIFQKKAQPFYKQSG
LNWTDAIAAENKRQQSILKFFSLFTNVKGITSSVKRRGYLDGILKRTKKDKKYTWYNLYLRAFLRSGDYFALSLRLFALT
LLVIFLVPEKWLAMVLVVVFDYLLLFQLTALKSHFAYQRMANLMPIGKDMQVSNLKRLINQIVLVMTLIQALCLFDLKFS
LILIGVMLVLSLVYLPAKLKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=260972 CR922_RS01805 WP_373867015.1 335694..336728(+) (pptB) [Streptococcus thermophilus strain EPS]
ATAGCTGAGCTTTTTAAGGAGCGTAGCAGACGACTCACTACCCGTTGTGCTAAGTATAGTCGCTACGTCTTTAATGACCA
CTTTATCCTGGTTCTTCTTTTTTTGCTGGGTTTTGTCTTGGTTCAGTATAGCCAGTTGCTCCGACATTTTCCAAAGAATC
CATGGGCCATCATTCTTGGCTTACTTGTGCTTTGTCTCTTACTGCCTTTTTGGGGCAATATTGCCACCTATTTAGAGCCT
GCAGACAAGCACTACCTCTTAGTTAAGGAAGAAGAGGTGCTAGACCATATTAAGAAGGCGACAGGGTGTGCTTTTAGATT
TTGGGTGCTCATCCAGACCTTGATTTTTATCTTGGTCGTCCCACTCTTTCTGGCCTTGGGTCTTCCAGTTTGGGGAGTTG
TCCTTGTAGCCGTGGCTATGGCTATTCTTAAGTATTTTATTTTCCAAAAGAAAGCACAACCTTTTTATAAGCAGTCTGGG
TTGAATTGGACTGATGCTATTGCAGCGGAGAATAAACGACAACAATCAATCTTGAAGTTTTTCTCACTCTTTACCAATGT
TAAGGGAATTACATCGAGTGTTAAACGCCGTGGCTATTTGGATGGCATTCTCAAGCGTACAAAGAAAGACAAGAAATATA
CGTGGTACAACCTGTACCTGAGAGCCTTCTTACGTTCAGGAGATTACTTTGCCCTTAGCCTACGCCTTTTTGCTTTAACA
CTTTTGGTTATTTTTTTGGTTCCTGAAAAATGGCTGGCTATGGTACTTGTGGTTGTTTTTGACTATCTCTTACTCTTCCA
GCTCACAGCGCTTAAATCGCACTTTGCTTACCAAAGGATGGCCAACCTTATGCCAATTGGAAAAGACATGCAGGTGAGCA
ATCTTAAGCGCTTGATTAATCAAATTGTCCTTGTAATGACACTGATTCAGGCTCTTTGTCTCTTTGACCTTAAATTTAGC
CTGATTTTGATTGGAGTTATGCTAGTTTTGAGTCTTGTTTACCTACCAGCCAAGCTTAAGAAGATGATTGACTAA

Domains

Predicted by InterproScan.

Bacterial ABC transporter protein EcsB (EcsB)

(157-329)

Bacterial ABC transporter protein EcsB (EcsB)

(3-159)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

98.837

100

0.988
  pptB Streptococcus salivarius strain HSISS4

92.733

100

0.927

Multiple sequence alignment