Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   CYD28_RS04990 Genome accession   NZ_CP025396
Coordinates   1038542..1039171 (+) Length   209 a.a.
NCBI ID   WP_011275376.1    Uniprot ID   Q4L7J5
Organism   Staphylococcus haemolyticus strain B     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1033542..1044171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYD28_RS04965 (CYD28_04965) - 1034243..1035100 (-) 858 WP_011275370.1 SDR family oxidoreductase -
  CYD28_RS04970 (CYD28_04970) - 1035172..1036184 (-) 1013 Protein_987 HoxN/HupN/NixA family nickel/cobalt transporter -
  CYD28_RS04975 (CYD28_04975) - 1036397..1036783 (+) 387 WP_011275373.1 hypothetical protein -
  CYD28_RS04980 (CYD28_04980) liaF 1036808..1037509 (+) 702 WP_011275374.1 cell wall-active antibiotics response protein LiaF -
  CYD28_RS04985 (CYD28_04985) vraS 1037506..1038552 (+) 1047 WP_059767274.1 sensor histidine kinase Regulator
  CYD28_RS04990 (CYD28_04990) vraR 1038542..1039171 (+) 630 WP_011275376.1 two-component system response regulator VraR Regulator
  CYD28_RS04995 (CYD28_04995) - 1039235..1040446 (-) 1212 WP_011275377.1 YihY/virulence factor BrkB family protein -
  CYD28_RS05000 (CYD28_05000) - 1040643..1040927 (-) 285 WP_011275378.1 YtxH domain-containing protein -
  CYD28_RS05005 (CYD28_05005) - 1040933..1041397 (-) 465 WP_011275379.1 low molecular weight protein-tyrosine-phosphatase -
  CYD28_RS05010 (CYD28_05010) - 1041539..1041748 (+) 210 WP_011275380.1 DUF1128 domain-containing protein -
  CYD28_RS05015 (CYD28_05015) - 1041762..1043009 (+) 1248 WP_011275381.1 aminopeptidase -
  CYD28_RS05020 (CYD28_05020) - 1043042..1043575 (+) 534 WP_011275382.1 acyl-CoA thioesterase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23575.23 Da        Isoelectric Point: 5.0058

>NTDB_id=260879 CYD28_RS04990 WP_011275376.1 1038542..1039171(+) (vraR) [Staphylococcus haemolyticus strain B]
MTIKVLFVDDHEMVRIGISSYLSTQSDIEIVGEGESGKDAIAKAHELKPDLILMDLLMDDMDGVEATTQIKKDLPHIKVV
MLTSFIEDKEVYRALDAGVDSYILKTTSASDIADAVRKTFNGESVFEPEVLVKMRNRMKKRAELYEMLTEREMEILLLIA
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ

Nucleotide


Download         Length: 630 bp        

>NTDB_id=260879 CYD28_RS04990 WP_011275376.1 1038542..1039171(+) (vraR) [Staphylococcus haemolyticus strain B]
ATGACGATTAAAGTTTTGTTCGTTGATGACCATGAAATGGTTCGAATTGGGATATCAAGTTATCTATCAACACAATCTGA
CATTGAGATAGTTGGAGAAGGGGAATCTGGTAAAGATGCCATTGCAAAAGCTCATGAATTAAAACCTGATTTAATTCTTA
TGGATTTATTAATGGATGATATGGATGGCGTTGAAGCAACTACTCAAATCAAAAAAGATTTGCCACATATTAAAGTTGTA
ATGTTAACTAGTTTTATTGAAGATAAAGAGGTATATAGAGCATTAGATGCTGGTGTAGATAGCTATATTTTAAAAACGAC
TAGTGCTAGTGATATAGCCGACGCAGTACGCAAAACTTTTAATGGTGAATCCGTATTTGAACCAGAAGTTTTAGTTAAGA
TGCGTAACAGAATGAAGAAACGTGCAGAATTATATGAAATGCTGACTGAGCGTGAAATGGAAATTTTATTATTAATTGCA
AAAGGTTATTCAAATCAAGAAATAGCGAGTGCTTCTCATATTACAATTAAAACCGTTAAAACTCATGTAAGTAATATATT
GAGTAAATTAGAAGTACAAGATAGAACACAAGCCGTAATTTATGCATTCCAACATAATTTGATTCAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(147-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4L7J5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

95.694

100

0.957
  degU Bacillus subtilis subsp. subtilis str. 168

33.929

100

0.364

Multiple sequence alignment