Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   CXQ83_RS06775 Genome accession   NZ_CP025281
Coordinates   1298197..1298712 (-) Length   171 a.a.
NCBI ID   WP_002801535.1    Uniprot ID   -
Organism   Campylobacter coli strain YH503     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1293197..1303712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXQ83_RS06760 (CXQ83_06715) - 1293300..1295117 (-) 1818 WP_101348782.1 motility associated factor glycosyltransferase family protein -
  CXQ83_RS06765 (CXQ83_06720) - 1295114..1296943 (-) 1830 WP_101348783.1 motility associated factor glycosyltransferase family protein -
  CXQ83_RS06770 (CXQ83_06725) - 1296955..1298197 (-) 1243 Protein_1310 DUF2920 family protein -
  CXQ83_RS06775 (CXQ83_06730) ctsG 1298197..1298712 (-) 516 WP_002801535.1 type II secretion system protein Machinery gene
  CXQ83_RS06780 (CXQ83_06735) tsaD 1298716..1299723 (-) 1008 WP_002785735.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  CXQ83_RS06785 (CXQ83_06740) - 1299720..1301114 (-) 1395 WP_101348784.1 M99 family carboxypeptidase catalytic domain-containing protein -
  CXQ83_RS06790 (CXQ83_06745) dxr 1301111..1302187 (-) 1077 WP_101348785.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  CXQ83_RS06795 (CXQ83_06750) - 1302184..1302909 (-) 726 WP_002792130.1 phosphatidate cytidylyltransferase -
  CXQ83_RS06800 (CXQ83_06755) - 1302918..1303256 (-) 339 WP_002777761.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18996.99 Da        Isoelectric Point: 8.4861

>NTDB_id=259833 CXQ83_RS06775 WP_002801535.1 1298197..1298712(-) (ctsG) [Campylobacter coli strain YH503]
MKRAFTILELVFVIVILGILAAIALPKFSSSRDEAEVSKSLNNLKTLINDISIYALKNSHLNTMNFMSNVSGVENVDLNN
FIGIKEVNFRVGEDKECIKLIFIDRNDFVLMGISSNEASKNAIINIANNPKQEFQNLDFTSNSKNKACVALSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=259833 CXQ83_RS06775 WP_002801535.1 1298197..1298712(-) (ctsG) [Campylobacter coli strain YH503]
GTGAAAAGAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTGATTTTGGGAATTTTAGCAGCGATTGCTTTGCCAAA
ATTCAGTTCTAGTAGAGATGAAGCTGAAGTGAGTAAATCCTTAAACAATCTTAAAACTTTAATCAATGATATAAGCATCT
ATGCCTTAAAAAATAGTCATTTAAACACTATGAATTTTATGAGCAATGTAAGTGGAGTAGAAAATGTCGATCTTAACAAT
TTTATAGGCATAAAAGAAGTAAATTTTAGGGTCGGAGAGGATAAAGAGTGTATAAAACTGATTTTCATCGATAGAAATGA
TTTTGTACTGATGGGAATTTCTAGTAATGAAGCAAGCAAAAATGCCATAATCAATATAGCCAATAACCCCAAACAAGAAT
TTCAAAACTTAGATTTTACAAGCAATTCAAAAAATAAAGCTTGCGTGGCACTAAGTAAAAATGAGAATTTTAAAAATTTA
GCTAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

78.363

100

0.784

Multiple sequence alignment