Detailed information
Bioinformatically predicted
Overview
| Name | comGH | Type | Machinery gene |
| Locus tag | DP112_RS00830 | Genome accession | NZ_CP030125 |
| Coordinates | 128277..129230 (+) | Length | 317 a.a. |
| NCBI ID | WP_114866115.1 | Uniprot ID | - |
| Organism | Streptococcus suis strain HA1003 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 123277..134230
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DP112_RS00790 (DP112_00790) | - | 123540..124490 (-) | 951 | WP_105134139.1 | S66 peptidase family protein | - |
| DP112_RS00795 (DP112_00795) | comGA | 124576..125526 (+) | 951 | WP_105149231.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| DP112_RS00800 (DP112_00800) | comGB | 125438..126475 (+) | 1038 | WP_238139242.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| DP112_RS00805 (DP112_00805) | comGC | 126477..126758 (+) | 282 | WP_114866111.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| DP112_RS00810 (DP112_00810) | comGD | 126739..127146 (+) | 408 | WP_114866112.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| DP112_RS00815 (DP112_00815) | comGE | 127118..127411 (+) | 294 | WP_114866113.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| DP112_RS00820 (DP112_00820) | comGF/cglF | 127398..127832 (+) | 435 | WP_024407345.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| DP112_RS00825 (DP112_00825) | comGG | 127810..128220 (+) | 411 | WP_114866114.1 | competence type IV pilus minor pilin ComGG | - |
| DP112_RS00830 (DP112_00830) | comGH | 128277..129230 (+) | 954 | WP_114866115.1 | class I SAM-dependent methyltransferase | Machinery gene |
| DP112_RS00835 (DP112_00835) | - | 129280..130467 (+) | 1188 | WP_114866116.1 | acetate kinase | - |
| DP112_RS00845 (DP112_00845) | - | 130783..131334 (+) | 552 | WP_074391332.1 | folate family ECF transporter S component | - |
| DP112_RS00850 (DP112_00850) | - | 131390..132652 (+) | 1263 | WP_114866118.1 | folylpolyglutamate synthase/dihydrofolate synthase family protein | - |
| DP112_RS00855 (DP112_00855) | tnpA | 132931..133404 (+) | 474 | WP_044685873.1 | IS200/IS605 family transposase | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 35585.70 Da Isoelectric Point: 4.4571
>NTDB_id=258916 DP112_RS00830 WP_114866115.1 128277..129230(+) (comGH) [Streptococcus suis strain HA1003]
MNFEKIEQAYDLLLENVQTIQNQLGTNIYDAMIEQNAAYVAGQHETDLVVNNNKTLKQLDLTKEEWRRAFQFLLIKANQT
EPMQYNHQFTPDSIGFILSFLVDQLVATSKVTVLEIGSGTGNLAQTILNASQKELDYLGIEVDDLLIDLSASIADVMQAD
ISFAQGDAVRPQILKESQVILGDLPIGYYPDDQIASRYQVASPNEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SDLLKGWLQEQANIVAMIALPPNLFGKAAMAKSIFVLQKKAARPLAPFVYPLQSLQEPEAIQKFMLNFKNWKQENAI
MNFEKIEQAYDLLLENVQTIQNQLGTNIYDAMIEQNAAYVAGQHETDLVVNNNKTLKQLDLTKEEWRRAFQFLLIKANQT
EPMQYNHQFTPDSIGFILSFLVDQLVATSKVTVLEIGSGTGNLAQTILNASQKELDYLGIEVDDLLIDLSASIADVMQAD
ISFAQGDAVRPQILKESQVILGDLPIGYYPDDQIASRYQVASPNEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SDLLKGWLQEQANIVAMIALPPNLFGKAAMAKSIFVLQKKAARPLAPFVYPLQSLQEPEAIQKFMLNFKNWKQENAI
Nucleotide
Download Length: 954 bp
>NTDB_id=258916 DP112_RS00830 WP_114866115.1 128277..129230(+) (comGH) [Streptococcus suis strain HA1003]
ATGAATTTTGAAAAGATCGAACAGGCTTACGACCTGCTATTAGAAAACGTACAGACTATCCAAAACCAGCTAGGCACCAA
TATCTATGATGCCATGATTGAGCAAAATGCTGCTTACGTAGCTGGTCAGCATGAGACAGATCTTGTTGTCAATAATAACA
AGACCTTGAAACAACTAGATTTAACCAAGGAAGAATGGCGCCGTGCCTTCCAATTCCTGCTCATCAAGGCCAATCAGACT
GAACCCATGCAGTATAACCACCAGTTCACACCAGACTCTATCGGATTTATCCTATCTTTTCTAGTGGACCAACTAGTAGC
TACTTCCAAGGTGACGGTTCTGGAAATTGGTTCGGGGACAGGCAATCTAGCTCAGACCATTCTCAACGCCAGCCAGAAAG
AATTGGATTACTTGGGGATCGAAGTGGACGACCTCTTGATTGATTTGTCGGCAAGTATTGCGGATGTCATGCAGGCAGAT
ATTTCTTTTGCTCAGGGAGATGCGGTACGTCCGCAGATTTTGAAGGAAAGTCAAGTAATTTTGGGAGATTTGCCTATCGG
CTACTATCCAGATGACCAGATTGCCAGTCGTTATCAGGTTGCCAGTCCAAATGAACATACCTACGCCCATCATTTACTCA
TGGAACAATCCCTCAAATATCTGGAAAAGGATGGATTCGCTATTCTCTTGGCTCCAAATGATTTGTTGACTAGTCCGCAA
AGCGATTTACTGAAAGGCTGGTTACAGGAGCAAGCCAATATTGTTGCCATGATTGCCCTGCCACCAAATCTCTTTGGGAA
GGCTGCTATGGCCAAGTCTATTTTTGTCTTGCAAAAGAAAGCTGCAAGACCGTTGGCGCCGTTTGTTTATCCCTTACAAA
GTCTTCAAGAACCAGAAGCTATTCAGAAGTTCATGCTCAATTTCAAAAATTGGAAGCAAGAGAATGCAATTTAA
ATGAATTTTGAAAAGATCGAACAGGCTTACGACCTGCTATTAGAAAACGTACAGACTATCCAAAACCAGCTAGGCACCAA
TATCTATGATGCCATGATTGAGCAAAATGCTGCTTACGTAGCTGGTCAGCATGAGACAGATCTTGTTGTCAATAATAACA
AGACCTTGAAACAACTAGATTTAACCAAGGAAGAATGGCGCCGTGCCTTCCAATTCCTGCTCATCAAGGCCAATCAGACT
GAACCCATGCAGTATAACCACCAGTTCACACCAGACTCTATCGGATTTATCCTATCTTTTCTAGTGGACCAACTAGTAGC
TACTTCCAAGGTGACGGTTCTGGAAATTGGTTCGGGGACAGGCAATCTAGCTCAGACCATTCTCAACGCCAGCCAGAAAG
AATTGGATTACTTGGGGATCGAAGTGGACGACCTCTTGATTGATTTGTCGGCAAGTATTGCGGATGTCATGCAGGCAGAT
ATTTCTTTTGCTCAGGGAGATGCGGTACGTCCGCAGATTTTGAAGGAAAGTCAAGTAATTTTGGGAGATTTGCCTATCGG
CTACTATCCAGATGACCAGATTGCCAGTCGTTATCAGGTTGCCAGTCCAAATGAACATACCTACGCCCATCATTTACTCA
TGGAACAATCCCTCAAATATCTGGAAAAGGATGGATTCGCTATTCTCTTGGCTCCAAATGATTTGTTGACTAGTCCGCAA
AGCGATTTACTGAAAGGCTGGTTACAGGAGCAAGCCAATATTGTTGCCATGATTGCCCTGCCACCAAATCTCTTTGGGAA
GGCTGCTATGGCCAAGTCTATTTTTGTCTTGCAAAAGAAAGCTGCAAGACCGTTGGCGCCGTTTGTTTATCCCTTACAAA
GTCTTCAAGAACCAGAAGCTATTCAGAAGTTCATGCTCAATTTCAAAAATTGGAAGCAAGAGAATGCAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGH | Streptococcus mutans UA140 |
61.076 |
99.685 |
0.609 |
| comGH | Streptococcus mutans UA159 |
60.759 |
99.685 |
0.606 |