Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   DP112_RS00810 Genome accession   NZ_CP030125
Coordinates   126739..127146 (+) Length   135 a.a.
NCBI ID   WP_114866112.1    Uniprot ID   -
Organism   Streptococcus suis strain HA1003     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 121739..132146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DP112_RS00785 (DP112_00785) - 123138..123512 (+) 375 WP_024385120.1 DUF1033 family protein -
  DP112_RS00790 (DP112_00790) - 123540..124490 (-) 951 WP_105134139.1 S66 peptidase family protein -
  DP112_RS00795 (DP112_00795) comGA 124576..125526 (+) 951 WP_105149231.1 competence type IV pilus ATPase ComGA Machinery gene
  DP112_RS00800 (DP112_00800) comGB 125438..126475 (+) 1038 WP_238139242.1 competence type IV pilus assembly protein ComGB Machinery gene
  DP112_RS00805 (DP112_00805) comGC 126477..126758 (+) 282 WP_114866111.1 competence type IV pilus major pilin ComGC Machinery gene
  DP112_RS00810 (DP112_00810) comGD 126739..127146 (+) 408 WP_114866112.1 competence type IV pilus minor pilin ComGD Machinery gene
  DP112_RS00815 (DP112_00815) comGE 127118..127411 (+) 294 WP_114866113.1 competence type IV pilus minor pilin ComGE Machinery gene
  DP112_RS00820 (DP112_00820) comGF/cglF 127398..127832 (+) 435 WP_024407345.1 competence type IV pilus minor pilin ComGF Machinery gene
  DP112_RS00825 (DP112_00825) comGG 127810..128220 (+) 411 WP_114866114.1 competence type IV pilus minor pilin ComGG -
  DP112_RS00830 (DP112_00830) comGH 128277..129230 (+) 954 WP_114866115.1 class I SAM-dependent methyltransferase Machinery gene
  DP112_RS00835 (DP112_00835) - 129280..130467 (+) 1188 WP_114866116.1 acetate kinase -
  DP112_RS00845 (DP112_00845) - 130783..131334 (+) 552 WP_074391332.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 15294.50 Da        Isoelectric Point: 10.0682

>NTDB_id=258913 DP112_RS00810 WP_114866112.1 126739..127146(+) (comGD) [Streptococcus suis strain HA1003]
MLRRKNKAFTLFESLLTLFVISFLAISLSGTVQTAFRSVQEEIFLWEFEGIYKDSQKLAASSHQTVNLAIGGQEVTNGYQ
AVEVPRNVEVLEGKTITFEENGGNSSLTKIRFRLSRKTVTYQLYIGSGRYKKTEK

Nucleotide


Download         Length: 408 bp        

>NTDB_id=258913 DP112_RS00810 WP_114866112.1 126739..127146(+) (comGD) [Streptococcus suis strain HA1003]
ATGCTGAGGCGAAAAAATAAGGCTTTTACCCTGTTTGAAAGCCTGCTAACCTTATTTGTCATCAGCTTTCTGGCAATCAG
CCTGTCGGGAACGGTGCAAACGGCTTTTCGGTCTGTTCAGGAAGAGATTTTTCTCTGGGAATTTGAGGGCATCTATAAAG
ACAGTCAGAAACTGGCAGCTAGTTCCCACCAAACAGTGAACCTTGCTATTGGCGGACAGGAAGTGACCAATGGTTATCAG
GCTGTAGAGGTACCCAGAAATGTAGAAGTATTGGAAGGGAAGACCATCACATTTGAAGAAAATGGTGGAAATTCTTCTCT
GACCAAGATTCGTTTTCGGCTTAGTCGAAAGACAGTCACGTATCAATTATATATAGGGAGTGGTCGCTATAAGAAAACAG
AAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus mutans UA159

47.287

95.556

0.452
  comGD Streptococcus mutans UA140

47.287

95.556

0.452
  comGD Streptococcus gordonii str. Challis substr. CH1

47.244

94.074

0.444
  comGD/cglD Streptococcus pneumoniae R6

46.032

93.333

0.43
  comGD/cglD Streptococcus pneumoniae TIGR4

46.032

93.333

0.43
  comGD/cglD Streptococcus pneumoniae Rx1

46.032

93.333

0.43
  comGD/cglD Streptococcus pneumoniae D39

46.032

93.333

0.43
  comGD/cglD Streptococcus mitis NCTC 12261

45.238

93.333

0.422
  comGD/cglD Streptococcus mitis SK321

45.238

93.333

0.422
  comGD Lactococcus lactis subsp. cremoris KW2

38.281

94.815

0.363