Detailed information NTG0258901

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: DP112_RS00330
• Genome accession: NZ_CP030125
• Coordinates: 53721..54722 (+)
• Length: 333 a.a.
• NCBI ID: WP_105118966.1
• Uniprot ID: -
• Organism: Streptococcus suis strain HA1003
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 48721..59722

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DP112_RS00310 (DP112_00310)	-	49036..49806 (+)	771	WP_114866087.1	hypothetical protein	-
DP112_RS00315 (DP112_00315)	-	49809..51521 (+)	1713	WP_114866088.1	ABC transporter ATP-binding protein	-
DP112_RS00320 (DP112_00320)	-	51652..52476 (+)	825	WP_114866089.1	ABC transporter ATP-binding protein	-
DP112_RS00325 (DP112_00325)	-	52469..53212 (+)	744	WP_044763137.1	ABC transporter permease	-
DP112_RS11060	-	53264..53437 (+)	174	WP_164503891.1	hypothetical protein	-
DP112_RS00330 (DP112_00330)	ruvB	53721..54722 (+)	1002	WP_105118966.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
DP112_RS00335 (DP112_00335)	-	54790..55413 (+)	624	WP_114866090.1	HAD-IA family hydrolase	-
DP112_RS00340 (DP112_00340)	comR	55518..56417 (+)	900	WP_114866091.1	helix-turn-helix domain-containing protein	Regulator
DP112_RS00345 (DP112_00345)	-	56634..57854 (+)	1221	WP_114866092.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-
DP112_RS00355 (DP112_00355)	-	58045..59568 (+)	1524	WP_114866093.1	quinol oxidase	-

Sequence

Protein

• Length: 333 a.a.
• Molecular weight: 37627.15 Da
• Isoelectric Point: 4.4708

>NTDB_id=258901 DP112_RS00330 WP_105118966.1 53721..54722(+) (ruvB) [Streptococcus suis strain HA1003]
MTNRILDMEQMQDEEYVERTLRPQKLNEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN
IKQTSGPVIEKAGDLVALLNDLEPGDVLFIDEIHRMPMAVEEILYSAMEDFYIDIMIGAGEASRSVHLELPPFTLIGATT
RAGMLSNPLRARFGITGHMEYYELADLTEIVERTADIFEMEITHEAAIELARRSRGTPRIANRLLKRVRDFAQIMGDGLI
DDSITDKALTMLDVDREGLDYVDQKILRTMIEMYGGGPVGLNTLSVNIAEERETVEDMYEPYLIQQGFLMRTRTGRVATA
KAYEHLGYPYTEK

Nucleotide

• Length: 1002 bp

>NTDB_id=258901 DP112_RS00330 WP_105118966.1 53721..54722(+) (ruvB) [Streptococcus suis strain HA1003]
ATGACAAATCGAATTTTAGACATGGAACAAATGCAGGACGAGGAGTATGTTGAGCGTACCCTGCGTCCGCAGAAATTAAA
TGAATACATCGGTCAGGACAAGGTCAAGGACCAGCTGAAAATCTTTATCGAGGCGGCCAAGCTCCGTGATGAAGCCTTGG
ACCATACGCTTCTTTTTGGCCCTCCGGGTCTGGGGAAAACCACCATGGCCTTTGTCATTGCCAACGAACTAGGGGTCAAT
ATCAAGCAGACCAGTGGTCCCGTCATTGAAAAGGCAGGCGATTTGGTGGCCCTTCTCAATGATTTGGAGCCAGGAGATGT
CCTCTTTATCGATGAAATCCACCGTATGCCCATGGCGGTTGAGGAGATTCTCTACTCTGCCATGGAAGATTTTTACATTG
ACATCATGATTGGGGCTGGGGAGGCCAGTCGCTCTGTGCATCTGGAGTTGCCACCTTTTACCCTGATTGGAGCAACCACT
CGTGCGGGGATGTTGTCCAATCCCCTGCGGGCTCGTTTTGGTATCACTGGTCACATGGAGTATTACGAACTGGCTGATTT
GACGGAGATTGTCGAGCGGACAGCGGACATCTTTGAGATGGAGATTACCCATGAAGCAGCTATCGAGCTGGCTCGTCGTT
CCCGCGGAACTCCACGTATCGCCAACCGCCTGCTCAAGCGAGTGCGGGATTTTGCACAGATTATGGGTGACGGCCTGATT
GACGATAGCATTACGGACAAGGCCCTGACCATGTTGGACGTGGACCGTGAAGGTCTGGACTATGTGGACCAAAAGATTCT
CCGTACCATGATTGAAATGTACGGCGGCGGTCCTGTCGGCCTCAACACCCTGTCGGTCAATATCGCCGAGGAGCGTGAAA
CGGTGGAGGACATGTACGAGCCCTACCTGATTCAGCAGGGCTTCCTCATGCGGACACGGACGGGGCGGGTTGCGACAGCC
AAGGCTTACGAGCACTTGGGTTATCCCTATACGGAAAAATAA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (257-326)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (21-179)

• RuvB AAA lid domain (AAA_lid_4) (182-255)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	90.634	99.399	0.901
ruvB	Streptococcus pneumoniae R6	90.332	99.399	0.898
ruvB	Streptococcus pneumoniae D39	90.332	99.399	0.898
ruvB	Bacillus subtilis subsp. subtilis str. 168	58.896	97.898	0.577
ruvB	Helicobacter pylori 26695	51.064	98.799	0.505
ruvB	Synechocystis sp. PCC 6803	50.479	93.994	0.474