Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   CWD84_RS10730 Genome accession   NZ_CP025001
Coordinates   2017004..2017612 (-) Length   202 a.a.
NCBI ID   WP_029575375.1    Uniprot ID   A0AAE2TI94
Organism   Bacillus siamensis strain SCSIO 05746     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2012004..2022612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWD84_RS10710 (CWD84_10710) dnaD 2012243..2012941 (+) 699 WP_060964916.1 DNA replication protein DnaD -
  CWD84_RS10715 (CWD84_10715) nth 2012960..2013619 (+) 660 WP_016939068.1 endonuclease III -
  CWD84_RS10720 (CWD84_10720) - 2013616..2014107 (+) 492 WP_060964917.1 YpoC family protein -
  CWD84_RS10725 (CWD84_10725) - 2014185..2016965 (-) 2781 WP_060964918.1 PBP1A family penicillin-binding protein -
  CWD84_RS10730 (CWD84_10730) recU 2017004..2017612 (-) 609 WP_029575375.1 Holliday junction resolvase RecU Machinery gene
  CWD84_RS10735 (CWD84_10735) - 2017654..2018616 (+) 963 WP_032864901.1 DUF2515 domain-containing protein -
  CWD84_RS10740 (CWD84_10740) sspM 2018655..2018759 (-) 105 WP_016939063.1 acid-soluble spore protein SspM -
  CWD84_RS10745 (CWD84_10745) - 2018964..2019209 (+) 246 WP_016939062.1 DUF5446 family protein -
  CWD84_RS10750 (CWD84_10750) - 2019255..2019623 (+) 369 WP_060964919.1 YppE family protein -
  CWD84_RS10755 (CWD84_10755) - 2019661..2019843 (-) 183 WP_003153532.1 YppF family protein -
  CWD84_RS10760 (CWD84_10760) - 2020031..2020501 (+) 471 WP_060964920.1 YppG family protein -
  CWD84_RS10765 (CWD84_10765) - 2020531..2020944 (-) 414 WP_045927220.1 Hsp20/alpha crystallin family protein -
  CWD84_RS10770 (CWD84_10770) - 2021082..2021588 (+) 507 WP_016939058.1 PTS sugar transporter subunit IIA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23666.75 Da        Isoelectric Point: 9.5778

>NTDB_id=257091 CWD84_RS10730 WP_029575375.1 2017004..2017612(-) (recU) [Bacillus siamensis strain SCSIO 05746]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFEKVYFLEADKLFVFWERKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQGQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=257091 CWD84_RS10730 WP_029575375.1 2017004..2017612(-) (recU) [Bacillus siamensis strain SCSIO 05746]
GTGATTCGGTATCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCGGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCATTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAGGCTTAT
TTTAAGCAGTCTTCGACAACCGATTACAATGGGATTTATAAAGGGCGCTACATTGATTTCGAAGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGACCATCAAATTGAGCACATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGAAAAGGTTTATTTCCTCGAGGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AACAACGGCAGAAAGTCGATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGGACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.452

98.515

0.891

Multiple sequence alignment