Detailed information NTG0256646

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: CV725_RS07585
• Genome accession: NZ_CP024951
• Coordinates: 1553948..1554931 (-)
• Length: 327 a.a.
• NCBI ID: WP_001861340.1
• Uniprot ID: D7FG34
• Organism: Helicobacter pylori B128
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1548948..1559931

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CV725_RS07565 (CV725_07585)	-	1549239..1550171 (-)	933	WP_001006014.1	GDP-L-fucose synthase	-
CV725_RS07570 (CV725_07590)	gmd	1550164..1551309 (-)	1146	WP_000659801.1	GDP-mannose 4,6-dehydratase	-
CV725_RS07575 (CV725_07595)	-	1551337..1552749 (-)	1413	WP_001861341.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
CV725_RS07580 (CV725_07600)	comB10	1552819..1553955 (-)	1137	WP_001045869.1	DNA type IV secretion system protein ComB10	Machinery gene
CV725_RS07585 (CV725_07605)	comB9	1553948..1554931 (-)	984	WP_001861340.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
CV725_RS07590 (CV725_07610)	comB8	1554931..1555674 (-)	744	WP_000660520.1	virB8 family protein	Machinery gene
CV725_RS07595 (CV725_07615)	comB7	1555671..1555784 (-)	114	WP_001217873.1	hypothetical protein	Machinery gene
CV725_RS07600 (CV725_07620)	comB6	1555800..1556855 (-)	1056	WP_000786677.1	P-type conjugative transfer protein TrbL	Machinery gene
CV725_RS07605 (CV725_07625)	-	1556863..1557858 (-)	996	WP_000468428.1	PDZ domain-containing protein	-
CV725_RS07610 (CV725_07630)	-	1557858..1558160 (-)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
CV725_RS07615 (CV725_07635)	panD	1558163..1558516 (-)	354	WP_000142236.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37670.47 Da
• Isoelectric Point: 9.4540

>NTDB_id=256646 CV725_RS07585 WP_001861340.1 1553948..1554931(-) (comB9) [Helicobacter pylori B128]
MRKFLYALMGFLLVFSVLKADDFLEEANETAPAHLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENAFENAPTNNKPLKEEPLKAGKEEAKEKEEETIIIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLG
ICSKKSKLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRF
VKKGKDE

Nucleotide

• Length: 984 bp

>NTDB_id=256646 CV725_RS07585 WP_001861340.1 1553948..1554931(-) (comB9) [Helicobacter pylori B128]
ATGCGGAAATTTTTATACGCTCTCATGGGCTTTTTATTGGTTTTTAGCGTTTTAAAAGCCGATGATTTTTTAGAAGAAGC
GAACGAAACAGCCCCGGCGCATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGATAAAAACC
GCTCCAAAATGTCCAACACCTTGAACATTGATTACTTTCAAGGGCAAACTTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGTATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCCAATATCAGCGTGATTGATAATGAAGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGACAAAAAC
TATTATTCCAACGCTTTTATGAAGCCGCAAAATAAAGAAAATGCCTTTGAAAATGCCCCCACAAACAACAAGCCCTTAAA
AGAAGAACCCTTAAAAGCAGGAAAAGAAGAAGCCAAAGAAAAAGAAGAAGAGACTATAATTATTGGCGATAACACTAACG
CCATGAAAATCGTTAAAAAAGACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTGGGG
ATTTGTTCTAAAAAATCCAAACTCTCCTTAATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGA
CAAAAAATTAGCGCTCTCTAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTAAATACTAGGATTG
TGGGCGATTACATTATCGCTGAAGACGTTTCGGCTAAATGGACTTTAAGGTTGGGCAAGGACTATTTGTGTATCCGTTTT
GTCAAAAAGGGTAAAGATGAATAA

Domains

Predicted by InterProScan.

• Conjugal transfer protein (CagX) (62-318)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.749	100	0.939