Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   CV726_RS00820 Genome accession   NZ_CP024950
Coordinates   176200..176481 (+) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain B130A     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 171200..181481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV726_RS00795 (CV726_00800) groES 171768..172124 (-) 357 WP_145939909.1 co-chaperone GroES -
  CV726_RS00805 (CV726_00810) dnaG 172410..174089 (+) 1680 WP_145939910.1 DNA primase -
  CV726_RS00810 (CV726_00815) - 174086..175138 (+) 1053 WP_145939911.1 MnmA/TRMU family protein -
  CV726_RS00815 (CV726_00820) - 175228..176055 (+) 828 WP_145939912.1 DUF5718 family protein -
  CV726_RS00820 (CV726_00825) comB2 176200..176481 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  CV726_RS00825 (CV726_00830) comB3 176481..176744 (+) 264 WP_000584964.1 hypothetical protein Machinery gene
  CV726_RS00830 (CV726_00835) comB4 176746..179109 (+) 2364 WP_145939913.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  CV726_RS00840 (CV726_00845) - 179411..180751 (+) 1341 WP_194151662.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=256614 CV726_RS00820 WP_001272686.1 176200..176481(+) (comB2) [Helicobacter pylori strain B130A]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=256614 CV726_RS00820 WP_001272686.1 176200..176481(+) (comB2) [Helicobacter pylori strain B130A]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAAGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCCATTT
ATGTGTGGAGGAATTTGGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAGGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment