Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   CUJ90_RS01805 Genome accession   NZ_CP024941
Coordinates   388615..390129 (-) Length   504 a.a.
NCBI ID   WP_083084707.1    Uniprot ID   -
Organism   Paraburkholderia terricola strain mHS1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 383615..395129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CUJ90_RS01780 (CUJ90_01785) - 384528..385160 (-) 633 WP_073429412.1 LON peptidase substrate-binding domain-containing protein -
  CUJ90_RS01785 (CUJ90_01790) rapZ 385200..386093 (-) 894 WP_073429413.1 RNase adapter RapZ -
  CUJ90_RS01790 (CUJ90_01795) hprK 386191..387159 (-) 969 WP_073429414.1 HPr(Ser) kinase/phosphatase -
  CUJ90_RS01795 (CUJ90_01800) - 387287..387802 (-) 516 WP_073429415.1 PTS sugar transporter subunit IIA -
  CUJ90_RS01800 (CUJ90_01805) raiA 388087..388443 (-) 357 WP_073429416.1 ribosome-associated translation inhibitor RaiA -
  CUJ90_RS01805 (CUJ90_01810) rpoN/rpoN1 388615..390129 (-) 1515 WP_083084707.1 RNA polymerase factor sigma-54 Machinery gene
  CUJ90_RS01810 (CUJ90_01815) lptB 390314..391099 (-) 786 WP_073429418.1 LPS export ABC transporter ATP-binding protein -
  CUJ90_RS01815 (CUJ90_01820) lptA 391096..391767 (-) 672 WP_114161836.1 lipopolysaccharide transport periplasmic protein LptA -
  CUJ90_RS01820 (CUJ90_01825) lptC 391789..392397 (-) 609 WP_073429420.1 LPS export ABC transporter periplasmic protein LptC -
  CUJ90_RS01825 (CUJ90_01830) - 392394..392954 (-) 561 WP_114161837.1 HAD family hydrolase -
  CUJ90_RS01830 (CUJ90_01835) kdsD 392954..393937 (-) 984 WP_114161838.1 arabinose 5-phosphate isomerase KdsD -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 55436.55 Da        Isoelectric Point: 5.0760

>NTDB_id=256499 CUJ90_RS01805 WP_083084707.1 388615..390129(-) (rpoN/rpoN1) [Paraburkholderia terricola strain mHS1]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVAMAISQNPLLENEDDWIASPLRVAADGSLIAQSPNSSPPPDQM
GGNTSSSSSSSERAENGEPQGVDEYNGLASDSNGDASQWNLDDYGRSGNASDDDDLPPLQIHESSTSLRDHLMAQLRVTQ
AGQRDRALITFLIESLDDDGYLAATLEEVLADLPEELEVDLDELNAALALLHSFDPAGVGARSASECLKLQLLRLEPSPT
RTLALEIVAHHLELLAARDFTRLRKHLKASDDDLRDAHLLIRSLEPFPGAAYGKAEADYVVPDIMVRKTAQGWQAELNPE
VVPKLRINHLYANILRNNRGDPGSGSLRQQLQEARWLIKNIQQRFETILRVAQAIVERQKSFFVHGEIAMRPLVLREIAD
TLGLHESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAENSKSPLSDSRIAELLAEQGFV
VARRTVAKYREALKIPAVNLRKSL

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=256499 CUJ90_RS01805 WP_083084707.1 388615..390129(-) (rpoN/rpoN1) [Paraburkholderia terricola strain mHS1]
ATGAAAGCCAGCCTCCAACTCCGCCTATCGCAGCATCTTGCGCTGACCCCGCAACTGCAGCAGTCCATCCGGCTGCTTCA
GCTGTCTACGCTCGAACTGCAGCAGGAAGTCGCCATGGCGATCTCGCAGAATCCGCTCCTCGAAAACGAGGACGACTGGA
TCGCGAGCCCCCTGCGCGTGGCGGCCGACGGCTCGCTGATTGCCCAGTCGCCCAACTCCTCACCGCCGCCCGATCAGATG
GGCGGCAATACGTCGTCATCGTCTAGCAGCAGCGAGCGCGCGGAGAACGGCGAGCCGCAGGGCGTCGACGAATACAACGG
TCTCGCGAGCGACAGCAACGGCGACGCGTCGCAATGGAATCTGGACGACTACGGCCGCTCCGGCAATGCGTCCGACGACG
ACGATTTGCCCCCGCTGCAGATCCACGAATCGAGCACCTCGCTGCGCGACCACCTGATGGCGCAATTGCGCGTCACTCAG
GCGGGCCAACGCGACCGGGCGCTGATCACCTTCCTGATCGAATCGCTCGACGACGACGGCTACCTCGCCGCCACGCTCGA
AGAAGTGCTGGCCGACCTGCCGGAAGAACTCGAAGTCGACCTGGATGAACTGAACGCGGCCCTCGCGCTGCTGCATAGCT
TCGACCCGGCTGGGGTCGGCGCGCGTTCGGCGTCGGAGTGTCTGAAGCTGCAATTGCTGCGGCTCGAACCGTCTCCTACC
CGCACGCTCGCGCTCGAGATCGTCGCGCATCATCTGGAACTGCTCGCGGCCCGTGATTTCACGCGTCTGCGCAAACATCT
GAAGGCAAGCGACGACGACCTGCGCGATGCCCACCTGCTGATCCGCTCGCTCGAACCGTTCCCCGGCGCCGCCTACGGCA
AGGCCGAAGCGGACTACGTGGTGCCGGACATCATGGTGCGCAAGACGGCTCAGGGGTGGCAGGCCGAACTGAATCCGGAA
GTGGTGCCGAAGCTGCGCATCAACCACCTGTACGCGAATATTTTGCGCAATAACCGCGGCGATCCCGGCAGCGGATCGTT
GCGCCAGCAACTGCAGGAAGCGCGCTGGCTGATCAAAAATATCCAGCAGCGTTTCGAAACGATCCTCCGGGTCGCGCAAG
CCATTGTCGAGCGTCAAAAGAGCTTTTTTGTGCACGGCGAAATTGCCATGCGCCCCTTGGTTTTGCGGGAAATTGCTGAT
ACGCTGGGTCTACACGAGTCAACTGTCTCGCGTGTGACAACCGGTAAATACATGCTGACCCCATTCGGGACGCTTGAATT
TAAGTACTTCTTTGGATCACACGTTTCGACAGACACGGGCGGCGCGGCTTCTTCCACGGCCATTCGCGCGCTCATCAAAC
AACTGATAGGAGCGGAAAACTCGAAATCGCCTCTCTCAGACAGCCGCATAGCCGAACTGCTGGCGGAACAGGGCTTCGTG
GTCGCACGGCGTACCGTTGCGAAGTACCGCGAAGCGCTCAAGATTCCGGCAGTCAACCTGCGCAAGTCTCTGTAG

Domains

Predicted by InterProScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(140-331)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(347-502)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

67.123

100

0.681

Multiple sequence alignment